Experiment: 1-ethyl-3-methylimidazolium acetate 35 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_16630 and PS417_16635 are separated by 7 nucleotides PS417_16635 and PS417_16640 are separated by 187 nucleotides PS417_16640 and PS417_16645 overlap by 11 nucleotides PS417_16645 and PS417_16650 are separated by 61 nucleotides
PS417_16630: PS417_16630 - NADH:ubiquinone oxidoreductase subunit M, at 3,634,550 to 3,636,082
_16630
PS417_16635: PS417_16635 - NADH:ubiquinone oxidoreductase subunit N, at 3,636,090 to 3,637,553
_16635
PS417_16640: PS417_16640 - toxin, at 3,637,741 to 3,638,142
_16640
PS417_16645: PS417_16645 - XRE family transcriptional regulator, at 3,638,132 to 3,638,446
_16645
PS417_16650: PS417_16650 - hypothetical protein, at 3,638,508 to 3,639,260
_16650
Position (kb)
3636
3637
3638 Strain fitness (log2 ratio)
-2
-1
0
1 at 3637.700 kb on - strand at 3637.715 kb on + strand at 3637.802 kb on + strand, within PS417_16640 at 3637.802 kb on + strand, within PS417_16640 at 3637.803 kb on - strand, within PS417_16640 at 3637.807 kb on - strand, within PS417_16640 at 3637.843 kb on + strand, within PS417_16640 at 3637.997 kb on - strand, within PS417_16640 at 3638.312 kb on + strand, within PS417_16645 at 3638.312 kb on + strand, within PS417_16645 at 3638.313 kb on - strand, within PS417_16645 at 3638.313 kb on - strand, within PS417_16645
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 35 mM remove 3,637,700 - +0.1 3,637,715 + -0.6 3,637,802 + PS417_16640 0.15 -0.1 3,637,802 + PS417_16640 0.15 -0.2 3,637,803 - PS417_16640 0.15 +0.6 3,637,807 - PS417_16640 0.16 -2.7 3,637,843 + PS417_16640 0.25 -0.0 3,637,997 - PS417_16640 0.64 -0.1 3,638,312 + PS417_16645 0.57 -0.3 3,638,312 + PS417_16645 0.57 +0.9 3,638,313 - PS417_16645 0.57 +0.1 3,638,313 - PS417_16645 0.57 +0.3
Or see this region's nucleotide sequence