Strain Fitness in Pseudomonas simiae WCS417 around PS417_16635

Experiment: 1-ethyl-3-methylimidazolium acetate 35 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16630 and PS417_16635 are separated by 7 nucleotidesPS417_16635 and PS417_16640 are separated by 187 nucleotidesPS417_16640 and PS417_16645 overlap by 11 nucleotidesPS417_16645 and PS417_16650 are separated by 61 nucleotides PS417_16630: PS417_16630 - NADH:ubiquinone oxidoreductase subunit M, at 3,634,550 to 3,636,082 _16630 PS417_16635: PS417_16635 - NADH:ubiquinone oxidoreductase subunit N, at 3,636,090 to 3,637,553 _16635 PS417_16640: PS417_16640 - toxin, at 3,637,741 to 3,638,142 _16640 PS417_16645: PS417_16645 - XRE family transcriptional regulator, at 3,638,132 to 3,638,446 _16645 PS417_16650: PS417_16650 - hypothetical protein, at 3,638,508 to 3,639,260 _16650 Position (kb) 3636 3637 3638Strain fitness (log2 ratio) -2 -1 0 1at 3637.700 kb on - strandat 3637.715 kb on + strandat 3637.802 kb on + strand, within PS417_16640at 3637.802 kb on + strand, within PS417_16640at 3637.803 kb on - strand, within PS417_16640at 3637.807 kb on - strand, within PS417_16640at 3637.843 kb on + strand, within PS417_16640at 3637.997 kb on - strand, within PS417_16640at 3638.312 kb on + strand, within PS417_16645at 3638.312 kb on + strand, within PS417_16645at 3638.313 kb on - strand, within PS417_16645at 3638.313 kb on - strand, within PS417_16645

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 35 mM
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3,637,700 - +0.1
3,637,715 + -0.6
3,637,802 + PS417_16640 0.15 -0.1
3,637,802 + PS417_16640 0.15 -0.2
3,637,803 - PS417_16640 0.15 +0.6
3,637,807 - PS417_16640 0.16 -2.7
3,637,843 + PS417_16640 0.25 -0.0
3,637,997 - PS417_16640 0.64 -0.1
3,638,312 + PS417_16645 0.57 -0.3
3,638,312 + PS417_16645 0.57 +0.9
3,638,313 - PS417_16645 0.57 +0.1
3,638,313 - PS417_16645 0.57 +0.3

Or see this region's nucleotide sequence