Strain Fitness in Pseudomonas simiae WCS417 around PS417_16580

Experiment: 1-ethyl-3-methylimidazolium acetate 35 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16575 and PS417_16580 are separated by 10 nucleotidesPS417_16580 and PS417_16585 are separated by 72 nucleotides PS417_16575: PS417_16575 - NADH-quinone oxidoreductase subunit A, at 3,622,615 to 3,623,028 _16575 PS417_16580: PS417_16580 - NADH dehydrogenase, at 3,623,039 to 3,623,713 _16580 PS417_16585: PS417_16585 - NADH:ubiquinone oxidoreductase, at 3,623,786 to 3,625,570 _16585 Position (kb) 3623 3624Strain fitness (log2 ratio) -1 0 1at 3622.271 kb on + strandat 3622.272 kb on - strandat 3622.272 kb on - strandat 3622.291 kb on - strandat 3622.430 kb on + strandat 3622.498 kb on + strandat 3622.513 kb on + strandat 3622.513 kb on + strandat 3622.550 kb on + strandat 3622.550 kb on + strandat 3622.551 kb on - strandat 3622.567 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 35 mM
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3,622,271 + +0.0
3,622,272 - +0.2
3,622,272 - +0.5
3,622,291 - -0.6
3,622,430 + -0.5
3,622,498 + -0.5
3,622,513 + -0.4
3,622,513 + +0.2
3,622,550 + +0.1
3,622,550 + -1.3
3,622,551 - -1.1
3,622,567 + -0.1

Or see this region's nucleotide sequence