Strain Fitness in Escherichia coli BW25113 around b3073
Experiment: methylene chloride 5 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | methylene chloride 5 vol% |
---|---|---|---|---|---|
remove | |||||
3,216,521 | - | aer | b3072 | 0.62 | +1.2 |
3,216,521 | - | aer | b3072 | 0.62 | +1.0 |
3,216,531 | - | aer | b3072 | 0.63 | -0.1 |
3,216,597 | - | aer | b3072 | 0.67 | +0.1 |
3,216,707 | + | aer | b3072 | 0.74 | +0.3 |
3,216,759 | + | aer | b3072 | 0.78 | -0.0 |
3,216,759 | + | aer | b3072 | 0.78 | +0.1 |
3,216,808 | + | aer | b3072 | 0.81 | +0.3 |
3,216,808 | + | aer | b3072 | 0.81 | -0.2 |
3,216,958 | + | -0.2 | |||
3,217,041 | - | +0.1 | |||
3,217,041 | - | +0.3 | |||
3,217,049 | - | +0.3 | |||
3,217,086 | + | +1.4 | |||
3,217,091 | - | +0.9 | |||
3,217,091 | - | +0.3 | |||
3,217,473 | - | -0.0 | |||
3,217,638 | - | +0.7 | |||
3,217,708 | + | ygjG | b3073 | 0.14 | +0.1 |
3,217,708 | + | ygjG | b3073 | 0.14 | -0.7 |
3,217,858 | + | ygjG | b3073 | 0.25 | -0.5 |
3,217,858 | + | ygjG | b3073 | 0.25 | -0.5 |
3,218,060 | + | ygjG | b3073 | 0.39 | +0.7 |
3,218,112 | + | ygjG | b3073 | 0.43 | +0.4 |
3,218,112 | + | ygjG | b3073 | 0.43 | +0.2 |
3,218,118 | - | ygjG | b3073 | 0.44 | +0.0 |
3,218,222 | + | ygjG | b3073 | 0.51 | +0.5 |
3,218,231 | - | ygjG | b3073 | 0.52 | -0.3 |
3,218,276 | - | ygjG | b3073 | 0.55 | -0.1 |
3,218,293 | - | ygjG | b3073 | 0.56 | -0.5 |
3,218,293 | - | ygjG | b3073 | 0.56 | +0.1 |
3,218,338 | - | ygjG | b3073 | 0.60 | -0.3 |
3,218,356 | + | ygjG | b3073 | 0.61 | +0.6 |
3,218,387 | - | ygjG | b3073 | 0.63 | -0.1 |
3,218,407 | - | ygjG | b3073 | 0.65 | +0.6 |
3,218,407 | - | ygjG | b3073 | 0.65 | +0.6 |
3,218,494 | + | ygjG | b3073 | 0.71 | -0.3 |
3,218,532 | - | ygjG | b3073 | 0.74 | -0.1 |
3,218,591 | - | ygjG | b3073 | 0.78 | +0.2 |
3,218,591 | - | ygjG | b3073 | 0.78 | +0.7 |
3,218,663 | - | ygjG | b3073 | 0.83 | -0.5 |
3,218,663 | - | ygjG | b3073 | 0.83 | +0.5 |
3,218,826 | + | +0.0 | |||
3,218,833 | - | +0.1 | |||
3,218,855 | + | +1.0 | |||
3,218,959 | + | +1.1 | |||
3,218,992 | + | ygjH | b3074 | 0.17 | -0.4 |
3,218,992 | + | ygjH | b3074 | 0.17 | -0.8 |
3,219,018 | + | ygjH | b3074 | 0.24 | +1.0 |
3,219,018 | + | ygjH | b3074 | 0.24 | +0.1 |
3,219,077 | - | ygjH | b3074 | 0.42 | +0.2 |
3,219,077 | - | ygjH | b3074 | 0.42 | +0.4 |
3,219,077 | - | ygjH | b3074 | 0.42 | -0.1 |
3,219,117 | - | ygjH | b3074 | 0.54 | +0.5 |
3,219,119 | + | ygjH | b3074 | 0.55 | +0.6 |
3,219,384 | - | -0.0 | |||
3,219,384 | - | -0.2 | |||
3,219,431 | - | -1.7 | |||
3,219,462 | + | -0.0 | |||
3,219,549 | - | +0.4 | |||
3,219,549 | - | -0.3 | |||
3,219,628 | - | ebgR | b3075 | 0.14 | +0.1 |
3,219,628 | - | ebgR | b3075 | 0.14 | -0.7 |
3,219,650 | - | ebgR | b3075 | 0.16 | +0.4 |
3,219,689 | + | ebgR | b3075 | 0.20 | -1.1 |
3,219,691 | + | ebgR | b3075 | 0.21 | -0.4 |
3,219,787 | + | ebgR | b3075 | 0.30 | -0.1 |
3,219,803 | - | ebgR | b3075 | 0.32 | -0.5 |
3,219,818 | - | ebgR | b3075 | 0.34 | -1.1 |
3,219,861 | + | ebgR | b3075 | 0.38 | +0.2 |
Or see this region's nucleotide sequence