Strain Fitness in Escherichia coli BW25113 around b2430

Experiment: methylene chloride 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmurP and b2430 are separated by 4 nucleotidesb2430 and b2431 are separated by 239 nucleotides b2429: murP - N-acetylmuramic acid phosphotransfer permease (NCBI), at 2,544,695 to 2,546,119 murP b2430: b2430 - putative beta-lactamase (VIMSS), at 2,546,124 to 2,547,428 b2430 b2431: b2431 - orf, hypothetical protein (VIMSS), at 2,547,668 to 2,548,567 b2431 Position (kb) 2546 2547 2548Strain fitness (log2 ratio) -1 0 1 2at 2545.234 kb on - strand, within murPat 2545.234 kb on - strand, within murPat 2545.234 kb on - strand, within murPat 2545.236 kb on - strand, within murPat 2545.306 kb on - strand, within murPat 2545.347 kb on + strand, within murPat 2545.445 kb on - strand, within murPat 2545.471 kb on - strand, within murPat 2545.471 kb on - strand, within murPat 2545.494 kb on - strand, within murPat 2545.494 kb on - strand, within murPat 2545.559 kb on + strand, within murPat 2545.559 kb on + strand, within murPat 2545.620 kb on + strand, within murPat 2545.637 kb on + strand, within murPat 2545.761 kb on - strand, within murPat 2545.768 kb on + strand, within murPat 2545.768 kb on + strand, within murPat 2545.786 kb on - strand, within murPat 2545.886 kb on + strand, within murPat 2546.146 kb on - strandat 2546.233 kb on - strandat 2546.239 kb on + strandat 2546.412 kb on + strand, within b2430at 2546.420 kb on - strand, within b2430at 2546.420 kb on - strand, within b2430at 2546.423 kb on + strand, within b2430at 2546.489 kb on - strand, within b2430at 2546.489 kb on - strand, within b2430at 2546.663 kb on - strand, within b2430at 2546.674 kb on + strand, within b2430at 2546.758 kb on + strand, within b2430at 2546.844 kb on + strand, within b2430at 2546.969 kb on - strand, within b2430at 2546.969 kb on - strand, within b2430at 2547.030 kb on + strand, within b2430at 2547.062 kb on - strand, within b2430at 2547.062 kb on - strand, within b2430at 2547.071 kb on - strand, within b2430at 2547.087 kb on - strand, within b2430at 2547.141 kb on - strand, within b2430at 2547.319 kb on - strandat 2547.338 kb on - strandat 2547.495 kb on + strandat 2547.495 kb on + strandat 2547.774 kb on + strand, within b2431at 2547.790 kb on + strand, within b2431at 2547.798 kb on - strand, within b2431at 2547.813 kb on + strand, within b2431at 2547.824 kb on + strand, within b2431at 2547.827 kb on - strand, within b2431at 2547.830 kb on - strand, within b2431at 2547.834 kb on + strand, within b2431at 2547.929 kb on - strandat 2547.929 kb on - strand, within b2431at 2547.937 kb on - strand, within b2431at 2547.937 kb on - strand, within b2431at 2547.991 kb on + strand, within b2431at 2547.999 kb on - strand, within b2431at 2548.032 kb on - strand, within b2431at 2548.032 kb on - strand, within b2431at 2548.044 kb on - strand, within b2431at 2548.054 kb on + strand, within b2431at 2548.054 kb on + strand, within b2431at 2548.072 kb on + strand, within b2431at 2548.163 kb on + strand, within b2431at 2548.201 kb on + strand, within b2431at 2548.203 kb on + strand, within b2431at 2548.229 kb on - strand, within b2431at 2548.322 kb on - strand, within b2431

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Per-strain Table

Position Strand Gene LocusTag Fraction methylene chloride 5 vol%
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2,545,234 - murP b2429 0.38 +0.8
2,545,234 - murP b2429 0.38 +0.4
2,545,234 - murP b2429 0.38 +0.3
2,545,236 - murP b2429 0.38 +0.8
2,545,306 - murP b2429 0.43 -0.1
2,545,347 + murP b2429 0.46 -0.0
2,545,445 - murP b2429 0.53 -0.2
2,545,471 - murP b2429 0.54 +1.4
2,545,471 - murP b2429 0.54 +0.1
2,545,494 - murP b2429 0.56 +0.7
2,545,494 - murP b2429 0.56 +0.3
2,545,559 + murP b2429 0.61 -0.5
2,545,559 + murP b2429 0.61 +0.3
2,545,620 + murP b2429 0.65 +0.4
2,545,637 + murP b2429 0.66 -0.3
2,545,761 - murP b2429 0.75 +0.4
2,545,768 + murP b2429 0.75 -1.2
2,545,768 + murP b2429 0.75 +0.2
2,545,786 - murP b2429 0.77 +1.2
2,545,886 + murP b2429 0.84 -0.5
2,546,146 - -0.0
2,546,233 - +0.0
2,546,239 + +0.2
2,546,412 + b2430 b2430 0.22 +0.9
2,546,420 - b2430 b2430 0.23 +0.4
2,546,420 - b2430 b2430 0.23 +0.0
2,546,423 + b2430 b2430 0.23 -0.8
2,546,489 - b2430 b2430 0.28 -1.1
2,546,489 - b2430 b2430 0.28 +0.2
2,546,663 - b2430 b2430 0.41 -0.3
2,546,674 + b2430 b2430 0.42 +0.8
2,546,758 + b2430 b2430 0.49 +0.4
2,546,844 + b2430 b2430 0.55 +0.2
2,546,969 - b2430 b2430 0.65 +1.0
2,546,969 - b2430 b2430 0.65 -1.0
2,547,030 + b2430 b2430 0.69 -0.3
2,547,062 - b2430 b2430 0.72 -0.4
2,547,062 - b2430 b2430 0.72 -0.5
2,547,071 - b2430 b2430 0.73 -0.6
2,547,087 - b2430 b2430 0.74 +0.5
2,547,141 - b2430 b2430 0.78 -0.2
2,547,319 - +1.8
2,547,338 - +0.0
2,547,495 + +0.1
2,547,495 + +0.1
2,547,774 + b2431 b2431 0.12 +0.4
2,547,790 + b2431 b2431 0.14 -0.6
2,547,798 - b2431 b2431 0.14 +0.3
2,547,813 + b2431 b2431 0.16 -0.3
2,547,824 + b2431 b2431 0.17 +0.6
2,547,827 - b2431 b2431 0.18 +0.9
2,547,830 - b2431 b2431 0.18 +0.4
2,547,834 + b2431 b2431 0.18 -0.2
2,547,929 - -0.1
2,547,929 - b2431 b2431 0.29 +0.7
2,547,937 - b2431 b2431 0.30 +0.7
2,547,937 - b2431 b2431 0.30 +0.3
2,547,991 + b2431 b2431 0.36 +1.0
2,547,999 - b2431 b2431 0.37 +0.2
2,548,032 - b2431 b2431 0.40 +1.2
2,548,032 - b2431 b2431 0.40 -1.4
2,548,044 - b2431 b2431 0.42 -0.3
2,548,054 + b2431 b2431 0.43 +0.4
2,548,054 + b2431 b2431 0.43 -0.5
2,548,072 + b2431 b2431 0.45 +0.3
2,548,163 + b2431 b2431 0.55 -0.2
2,548,201 + b2431 b2431 0.59 +0.0
2,548,203 + b2431 b2431 0.59 -1.2
2,548,229 - b2431 b2431 0.62 -0.2
2,548,322 - b2431 b2431 0.73 -0.3

Or see this region's nucleotide sequence