Strain Fitness in Escherichia coli BW25113 around b2019
Experiment: methylene chloride 5 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | methylene chloride 5 vol% |
---|---|---|---|---|---|
remove | |||||
2,087,364 | - | yoeB | b4539 | 0.51 | +0.9 |
2,087,506 | - | +0.3 | |||
2,087,506 | - | +0.9 | |||
2,087,544 | + | yefM | b2017 | 0.23 | -0.8 |
2,087,642 | - | yefM | b2017 | 0.62 | +0.3 |
2,087,867 | + | +0.6 | |||
2,088,113 | - | -0.4 | |||
2,088,203 | - | +0.5 | |||
2,088,203 | - | +0.9 | |||
2,088,316 | + | hisG | b2019 | 0.11 | -0.8 |
2,088,484 | - | hisG | b2019 | 0.30 | +0.6 |
2,088,602 | + | hisG | b2019 | 0.43 | -0.6 |
2,088,610 | - | hisG | b2019 | 0.44 | -0.4 |
2,088,610 | - | hisG | b2019 | 0.44 | -0.2 |
2,088,657 | - | hisG | b2019 | 0.49 | -0.2 |
2,088,681 | - | hisG | b2019 | 0.52 | +0.3 |
2,088,859 | + | hisG | b2019 | 0.71 | -0.2 |
2,088,900 | + | hisG | b2019 | 0.76 | +0.5 |
2,088,900 | + | hisG | b2019 | 0.76 | +0.4 |
2,089,029 | + | +0.7 | |||
2,089,104 | + | +0.6 | |||
2,089,133 | - | +0.1 | |||
2,089,155 | - | -0.2 | |||
2,089,187 | - | +0.3 | |||
2,089,234 | - | -0.0 | |||
2,089,234 | - | +0.5 | |||
2,089,267 | + | hisD | b2020 | 0.11 | -0.1 |
2,089,326 | + | hisD | b2020 | 0.16 | +0.3 |
2,089,419 | - | hisD | b2020 | 0.23 | +0.3 |
2,089,504 | + | hisD | b2020 | 0.29 | +0.5 |
2,089,605 | - | hisD | b2020 | 0.37 | -0.2 |
2,089,755 | - | hisD | b2020 | 0.49 | -0.3 |
2,089,776 | + | hisD | b2020 | 0.50 | +0.2 |
2,089,844 | + | hisD | b2020 | 0.55 | -0.2 |
2,089,929 | - | hisD | b2020 | 0.62 | +0.0 |
2,089,929 | - | hisD | b2020 | 0.62 | +0.3 |
2,090,018 | - | hisD | b2020 | 0.69 | -0.4 |
2,090,018 | - | hisD | b2020 | 0.69 | +0.0 |
2,090,075 | - | hisD | b2020 | 0.73 | +0.8 |
Or see this region's nucleotide sequence