Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF932

Experiment: LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF930 and GFF931 are separated by 226 nucleotidesGFF931 and GFF932 overlap by 4 nucleotidesGFF932 and GFF933 are separated by 73 nucleotides GFF930 - Aspartate carbamoyltransferase (EC 2.1.3.2), at 107,322 to 108,257 GFF930 GFF931 - Arginine pathway regulatory protein ArgR, repressor of arg regulon, at 108,484 to 108,972 GFF931 GFF932 - hypothetical protein, at 108,969 to 109,085 GFF932 GFF933 - Arginine/ornithine antiporter ArcD, at 109,159 to 110,562 GFF933 Position (kb) 108 109 110Strain fitness (log2 ratio) -2 -1 0 1 2at 107.969 kb on + strand, within GFF930at 107.969 kb on + strand, within GFF930at 107.969 kb on + strand, within GFF930at 108.194 kb on + strandat 108.230 kb on + strandat 108.261 kb on + strandat 108.573 kb on + strand, within GFF931at 108.573 kb on + strand, within GFF931at 108.685 kb on - strand, within GFF931at 108.685 kb on - strand, within GFF931at 108.953 kb on + strandat 108.954 kb on - strandat 108.992 kb on + strand, within GFF932at 109.119 kb on + strandat 109.135 kb on + strandat 109.161 kb on - strandat 109.161 kb on - strandat 109.239 kb on - strandat 109.248 kb on - strandat 109.863 kb on + strand, within GFF933at 109.924 kb on + strand, within GFF933at 109.924 kb on + strand, within GFF933

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI
remove
107,969 + GFF930 0.69 -0.1
107,969 + GFF930 0.69 -1.0
107,969 + GFF930 0.69 +0.2
108,194 + +1.7
108,230 + +1.4
108,261 + +0.3
108,573 + GFF931 0.18 -0.3
108,573 + GFF931 0.18 -0.2
108,685 - GFF931 0.41 +0.4
108,685 - GFF931 0.41 -2.0
108,953 + +0.2
108,954 - +0.7
108,992 + GFF932 0.20 -0.3
109,119 + -0.2
109,135 + +0.2
109,161 - -2.5
109,161 - +2.3
109,239 - -0.4
109,248 - +0.0
109,863 + GFF933 0.50 +1.7
109,924 + GFF933 0.54 +0.3
109,924 + GFF933 0.54 -0.7

Or see this region's nucleotide sequence