Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF578

Experiment: LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF577 and GFF578 overlap by 1 nucleotidesGFF578 and GFF579 are separated by 19 nucleotides GFF577 - Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27), at 308,971 to 310,266 GFF577 GFF578 - Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21), at 310,266 to 311,699 GFF578 GFF579 - Glycogen phosphorylase (EC 2.4.1.1), at 311,719 to 314,166 GFF579 Position (kb) 310 311 312Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 309.291 kb on + strand, within GFF577at 309.351 kb on + strand, within GFF577at 309.351 kb on + strand, within GFF577at 309.352 kb on - strand, within GFF577at 309.374 kb on - strand, within GFF577at 309.400 kb on - strand, within GFF577at 309.400 kb on - strand, within GFF577at 309.403 kb on + strand, within GFF577at 309.404 kb on - strand, within GFF577at 309.424 kb on - strand, within GFF577at 309.424 kb on - strand, within GFF577at 309.472 kb on - strand, within GFF577at 309.640 kb on + strand, within GFF577at 309.641 kb on - strand, within GFF577at 309.800 kb on + strand, within GFF577at 309.800 kb on + strand, within GFF577at 309.801 kb on - strand, within GFF577at 309.801 kb on - strand, within GFF577at 309.804 kb on + strand, within GFF577at 309.868 kb on + strand, within GFF577at 309.868 kb on + strand, within GFF577at 309.868 kb on + strand, within GFF577at 309.868 kb on + strand, within GFF577at 309.869 kb on - strand, within GFF577at 309.869 kb on - strand, within GFF577at 309.869 kb on - strand, within GFF577at 309.869 kb on - strand, within GFF577at 309.891 kb on + strand, within GFF577at 309.892 kb on - strand, within GFF577at 309.898 kb on - strand, within GFF577at 309.951 kb on + strand, within GFF577at 309.988 kb on - strand, within GFF577at 309.988 kb on - strand, within GFF577at 310.038 kb on - strand, within GFF577at 310.053 kb on + strand, within GFF577at 310.107 kb on - strand, within GFF577at 310.134 kb on + strand, within GFF577at 310.135 kb on - strand, within GFF577at 310.209 kb on + strandat 310.209 kb on + strandat 310.276 kb on + strandat 310.276 kb on + strandat 310.282 kb on + strandat 310.283 kb on - strandat 310.461 kb on - strand, within GFF578at 310.485 kb on + strand, within GFF578at 310.485 kb on + strand, within GFF578at 310.486 kb on - strand, within GFF578at 310.486 kb on - strand, within GFF578at 310.565 kb on - strand, within GFF578at 310.565 kb on - strand, within GFF578at 310.566 kb on + strand, within GFF578at 310.572 kb on + strand, within GFF578at 310.573 kb on - strand, within GFF578at 310.603 kb on + strand, within GFF578at 310.758 kb on + strand, within GFF578at 310.758 kb on + strand, within GFF578at 310.817 kb on + strand, within GFF578at 310.873 kb on - strand, within GFF578at 310.875 kb on + strand, within GFF578at 310.886 kb on + strand, within GFF578at 310.886 kb on + strand, within GFF578at 310.887 kb on - strand, within GFF578at 310.888 kb on + strand, within GFF578at 310.909 kb on - strand, within GFF578at 310.909 kb on - strand, within GFF578at 310.923 kb on - strand, within GFF578at 310.996 kb on + strand, within GFF578at 311.418 kb on + strand, within GFF578at 311.418 kb on + strand, within GFF578at 311.419 kb on - strand, within GFF578at 311.419 kb on - strand, within GFF578at 311.544 kb on - strand, within GFF578at 311.617 kb on + strandat 311.617 kb on + strandat 311.646 kb on - strandat 311.686 kb on - strandat 311.697 kb on + strandat 311.719 kb on - strandat 311.733 kb on + strandat 311.734 kb on - strandat 311.734 kb on - strandat 311.779 kb on - strandat 311.779 kb on - strandat 311.785 kb on + strandat 311.788 kb on - strandat 311.899 kb on - strandat 311.936 kb on - strandat 311.968 kb on - strand, within GFF579at 312.038 kb on + strand, within GFF579at 312.175 kb on + strand, within GFF579at 312.196 kb on - strand, within GFF579at 312.472 kb on + strand, within GFF579at 312.473 kb on - strand, within GFF579at 312.561 kb on - strand, within GFF579at 312.561 kb on - strand, within GFF579at 312.577 kb on + strand, within GFF579

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI
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309,291 + GFF577 0.25 -2.2
309,351 + GFF577 0.29 +0.7
309,351 + GFF577 0.29 -0.8
309,352 - GFF577 0.29 -2.3
309,374 - GFF577 0.31 -0.3
309,400 - GFF577 0.33 +1.0
309,400 - GFF577 0.33 -1.0
309,403 + GFF577 0.33 -0.9
309,404 - GFF577 0.33 +1.5
309,424 - GFF577 0.35 +2.7
309,424 - GFF577 0.35 +0.2
309,472 - GFF577 0.39 +0.2
309,640 + GFF577 0.52 -2.3
309,641 - GFF577 0.52 -0.9
309,800 + GFF577 0.64 -0.4
309,800 + GFF577 0.64 -1.0
309,801 - GFF577 0.64 +0.6
309,801 - GFF577 0.64 -0.7
309,804 + GFF577 0.64 -1.0
309,868 + GFF577 0.69 +1.8
309,868 + GFF577 0.69 -0.1
309,868 + GFF577 0.69 -1.1
309,868 + GFF577 0.69 -0.2
309,869 - GFF577 0.69 -0.0
309,869 - GFF577 0.69 +0.1
309,869 - GFF577 0.69 -0.1
309,869 - GFF577 0.69 +0.5
309,891 + GFF577 0.71 +0.3
309,892 - GFF577 0.71 -0.8
309,898 - GFF577 0.72 -0.0
309,951 + GFF577 0.76 +2.6
309,988 - GFF577 0.78 +0.3
309,988 - GFF577 0.78 -0.1
310,038 - GFF577 0.82 -1.7
310,053 + GFF577 0.83 +1.1
310,107 - GFF577 0.88 +1.2
310,134 + GFF577 0.90 -0.3
310,135 - GFF577 0.90 -3.2
310,209 + -1.8
310,209 + -2.5
310,276 + -1.9
310,276 + -0.8
310,282 + -2.0
310,283 - -1.2
310,461 - GFF578 0.14 +0.5
310,485 + GFF578 0.15 -0.7
310,485 + GFF578 0.15 +0.9
310,486 - GFF578 0.15 -0.5
310,486 - GFF578 0.15 -2.2
310,565 - GFF578 0.21 -0.7
310,565 - GFF578 0.21 -2.0
310,566 + GFF578 0.21 -2.1
310,572 + GFF578 0.21 -2.6
310,573 - GFF578 0.21 -0.3
310,603 + GFF578 0.24 -0.4
310,758 + GFF578 0.34 +0.1
310,758 + GFF578 0.34 -0.3
310,817 + GFF578 0.38 +0.2
310,873 - GFF578 0.42 +0.3
310,875 + GFF578 0.42 -0.6
310,886 + GFF578 0.43 -0.6
310,886 + GFF578 0.43 -0.3
310,887 - GFF578 0.43 -0.3
310,888 + GFF578 0.43 -2.0
310,909 - GFF578 0.45 -1.2
310,909 - GFF578 0.45 +0.1
310,923 - GFF578 0.46 -1.5
310,996 + GFF578 0.51 -1.3
311,418 + GFF578 0.80 -0.8
311,418 + GFF578 0.80 -1.0
311,419 - GFF578 0.80 -0.2
311,419 - GFF578 0.80 +0.0
311,544 - GFF578 0.89 -0.3
311,617 + -0.2
311,617 + +1.1
311,646 - -0.1
311,686 - +0.2
311,697 + -0.3
311,719 - +0.1
311,733 + +0.3
311,734 - -0.2
311,734 - +2.1
311,779 - +0.5
311,779 - -0.7
311,785 + +0.3
311,788 - -0.6
311,899 - +0.3
311,936 - +1.2
311,968 - GFF579 0.10 -0.0
312,038 + GFF579 0.13 -0.3
312,175 + GFF579 0.19 -1.2
312,196 - GFF579 0.19 +0.3
312,472 + GFF579 0.31 +0.2
312,473 - GFF579 0.31 +0.8
312,561 - GFF579 0.34 -0.0
312,561 - GFF579 0.34 +0.5
312,577 + GFF579 0.35 +0.2

Or see this region's nucleotide sequence