Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4759

Experiment: LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4758 and GFF4759 overlap by 1 nucleotidesGFF4759 and GFF4760 overlap by 23 nucleotides GFF4758 - Type III secretion host injection and negative regulator protein (YopD), at 65,029 to 66,039 GFF4758 GFF4759 - Surface presentation of antigens protein SpaM, at 66,039 to 66,482 GFF4759 GFF4760 - Type III secretion cytoplasmic ATP synthase (EC 3.6.3.14, YscN,SpaL,MxiB,HrcN,EscN), at 66,460 to 67,755 GFF4760 Position (kb) 66 67Strain fitness (log2 ratio) -2 -1 0 1 2 3at 65.164 kb on - strand, within GFF4758at 65.219 kb on + strand, within GFF4758at 65.247 kb on - strand, within GFF4758at 65.259 kb on + strand, within GFF4758at 65.260 kb on - strand, within GFF4758at 65.415 kb on + strand, within GFF4758at 65.425 kb on - strand, within GFF4758at 65.526 kb on + strand, within GFF4758at 65.551 kb on - strand, within GFF4758at 65.585 kb on - strand, within GFF4758at 65.639 kb on - strand, within GFF4758at 66.092 kb on - strand, within GFF4759at 66.268 kb on - strand, within GFF4759at 66.456 kb on + strandat 66.457 kb on - strandat 66.716 kb on - strand, within GFF4760at 66.777 kb on - strand, within GFF4760at 66.855 kb on - strand, within GFF4760at 67.049 kb on + strand, within GFF4760at 67.161 kb on + strand, within GFF4760at 67.162 kb on - strand, within GFF4760at 67.319 kb on - strand, within GFF4760at 67.380 kb on - strand, within GFF4760

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI
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65,164 - GFF4758 0.13 -0.3
65,219 + GFF4758 0.19 -0.0
65,247 - GFF4758 0.22 +0.1
65,259 + GFF4758 0.23 +0.7
65,260 - GFF4758 0.23 -2.1
65,415 + GFF4758 0.38 -0.1
65,425 - GFF4758 0.39 +0.3
65,526 + GFF4758 0.49 -0.7
65,551 - GFF4758 0.52 +0.6
65,585 - GFF4758 0.55 -0.1
65,639 - GFF4758 0.60 +0.4
66,092 - GFF4759 0.12 -1.7
66,268 - GFF4759 0.52 -0.8
66,456 + +0.2
66,457 - -1.3
66,716 - GFF4760 0.20 -0.6
66,777 - GFF4760 0.24 +0.3
66,855 - GFF4760 0.30 -0.0
67,049 + GFF4760 0.45 +1.0
67,161 + GFF4760 0.54 +1.0
67,162 - GFF4760 0.54 +0.2
67,319 - GFF4760 0.66 +2.9
67,380 - GFF4760 0.71 +0.2

Or see this region's nucleotide sequence