Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4456

Experiment: LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4455 and GFF4456 are separated by 18 nucleotidesGFF4456 and GFF4457 are separated by 164 nucleotidesGFF4457 and GFF4458 are separated by 22 nucleotides GFF4455 - Transcriptional regulator of fimbriae expression FimY, at 241,706 to 242,428 GFF4455 GFF4456 - Putative diguanylate cyclase/phosphodiesterase domain 0, at 242,447 to 242,755 GFF4456 GFF4457 - Fimbriae W protein, at 242,920 to 243,516 GFF4457 GFF4458 - FIG01046307: hypothetical protein, at 243,539 to 243,709 GFF4458 Position (kb) 242 243Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 241.789 kb on + strand, within GFF4455at 242.021 kb on - strand, within GFF4455at 242.088 kb on - strand, within GFF4455at 242.108 kb on - strand, within GFF4455at 242.120 kb on + strand, within GFF4455at 242.131 kb on + strand, within GFF4455at 242.132 kb on - strand, within GFF4455at 242.136 kb on - strand, within GFF4455at 242.226 kb on + strand, within GFF4455at 242.301 kb on + strand, within GFF4455at 242.302 kb on - strand, within GFF4455at 242.454 kb on - strandat 242.477 kb on + strandat 242.581 kb on + strand, within GFF4456at 243.288 kb on + strand, within GFF4457at 243.328 kb on - strand, within GFF4457at 243.398 kb on - strand, within GFF4457at 243.398 kb on - strand, within GFF4457at 243.498 kb on + strandat 243.507 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI
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241,789 + GFF4455 0.11 -0.6
242,021 - GFF4455 0.44 -2.5
242,088 - GFF4455 0.53 +0.7
242,108 - GFF4455 0.56 -0.0
242,120 + GFF4455 0.57 +0.2
242,131 + GFF4455 0.59 +0.1
242,132 - GFF4455 0.59 +0.8
242,136 - GFF4455 0.59 -1.2
242,226 + GFF4455 0.72 -1.5
242,301 + GFF4455 0.82 +0.7
242,302 - GFF4455 0.82 -3.0
242,454 - +1.8
242,477 + +0.9
242,581 + GFF4456 0.43 +1.0
243,288 + GFF4457 0.62 +0.9
243,328 - GFF4457 0.68 -0.9
243,398 - GFF4457 0.80 -1.5
243,398 - GFF4457 0.80 -0.4
243,498 + -0.4
243,507 + -0.5

Or see this region's nucleotide sequence