Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF41

Experiment: LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF40 and GFF41 overlap by 1 nucleotidesGFF41 and GFF42 are separated by 3 nucleotidesGFF42 and GFF43 are separated by 105 nucleotides GFF40 - Lipid-A-disaccharide synthase (EC 2.4.1.182), at 20,158 to 21,306 GFF40 GFF41 - Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase (EC 2.3.1.129), at 21,306 to 22,094 GFF41 GFF42 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form (EC 4.2.1.59), at 22,098 to 22,553 GFF42 GFF43 - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.-), at 22,659 to 23,684 GFF43 Position (kb) 21 22 23Strain fitness (log2 ratio) -2 -1 0 1at 22.661 kb on - strandat 22.674 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI
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22,661 - -2.3
22,674 - +0.6

Or see this region's nucleotide sequence