Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4062

Experiment: LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4060 and GFF4061 are separated by 35 nucleotidesGFF4061 and GFF4062 are separated by 142 nucleotidesGFF4062 and GFF4063 are separated by 111 nucleotidesGFF4063 and GFF4064 are separated by 3 nucleotides GFF4060 - putative cytoplasmic protein, at 23,093 to 23,578 GFF4060 GFF4061 - putative periplasmic protein, at 23,614 to 23,946 GFF4061 GFF4062 - Putative cytoplasmic protein USSDB7A, at 24,089 to 24,574 GFF4062 GFF4063 - Type VI secretion lipoprotein/VasD, at 24,686 to 25,177 GFF4063 GFF4064 - Uncharacterized protein ImpJ/VasE, at 25,181 to 26,524 GFF4064 Position (kb) 24 25Strain fitness (log2 ratio) -2 -1 0 1 2at 23.318 kb on + strand, within GFF4060at 23.663 kb on - strand, within GFF4061at 24.269 kb on + strand, within GFF4062at 24.270 kb on - strand, within GFF4062at 24.270 kb on - strand, within GFF4062at 24.302 kb on + strand, within GFF4062at 24.829 kb on - strand, within GFF4063at 25.156 kb on - strandat 25.322 kb on + strand, within GFF4064at 25.327 kb on + strand, within GFF4064

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI
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23,318 + GFF4060 0.46 -0.8
23,663 - GFF4061 0.15 +0.4
24,269 + GFF4062 0.37 +2.1
24,270 - GFF4062 0.37 -2.0
24,270 - GFF4062 0.37 +2.0
24,302 + GFF4062 0.44 +0.6
24,829 - GFF4063 0.29 -0.6
25,156 - +1.6
25,322 + GFF4064 0.10 +0.3
25,327 + GFF4064 0.11 +0.7

Or see this region's nucleotide sequence