Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3287

Experiment: LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3287 and GFF3288 are separated by 50 nucleotidesGFF3288 and GFF3289 overlap by 1 nucleotides GFF3287 - FIG01045683: hypothetical protein, at 60,354 to 60,509 GFF3287 GFF3288 - Chaperone-modulator protein CbpM, at 60,560 to 60,865 GFF3288 GFF3289 - DnaJ-class molecular chaperone CbpA, at 60,865 to 61,785 GFF3289 Position (kb) 60 61Strain fitness (log2 ratio) -2 -1 0 1 2at 59.841 kb on - strandat 59.877 kb on + strandat 59.886 kb on - strandat 60.449 kb on + strand, within GFF3287at 60.450 kb on - strand, within GFF3287at 60.470 kb on + strand, within GFF3287at 60.470 kb on + strand, within GFF3287at 60.471 kb on - strand, within GFF3287at 60.507 kb on + strandat 60.759 kb on + strand, within GFF3288at 60.795 kb on - strand, within GFF3288at 60.866 kb on + strandat 60.866 kb on + strandat 60.984 kb on - strand, within GFF3289at 60.984 kb on - strand, within GFF3289at 61.221 kb on + strand, within GFF3289at 61.348 kb on - strand, within GFF3289at 61.364 kb on + strand, within GFF3289at 61.365 kb on - strand, within GFF3289at 61.368 kb on + strand, within GFF3289at 61.375 kb on - strand, within GFF3289

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI
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59,841 - +2.5
59,877 + -0.9
59,886 - +0.6
60,449 + GFF3287 0.61 -2.3
60,450 - GFF3287 0.62 -1.5
60,470 + GFF3287 0.74 -1.5
60,470 + GFF3287 0.74 -0.1
60,471 - GFF3287 0.75 -1.7
60,507 + -0.5
60,759 + GFF3288 0.65 -0.0
60,795 - GFF3288 0.77 -0.5
60,866 + -0.8
60,866 + +0.7
60,984 - GFF3289 0.13 +0.0
60,984 - GFF3289 0.13 -2.1
61,221 + GFF3289 0.39 -1.9
61,348 - GFF3289 0.52 +0.2
61,364 + GFF3289 0.54 -0.3
61,365 - GFF3289 0.54 -0.8
61,368 + GFF3289 0.55 -0.3
61,375 - GFF3289 0.55 -0.3

Or see this region's nucleotide sequence