Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2816

Experiment: LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2814 and GFF2815 are separated by 49 nucleotidesGFF2815 and GFF2816 are separated by 170 nucleotidesGFF2816 and GFF2817 are separated by 23 nucleotidesGFF2817 and GFF2818 are separated by 3 nucleotides GFF2814 - FIG094199: Fumarylacetoacetate hydrolase, at 336,228 to 336,887 GFF2814 GFF2815 - Protein YcgL, at 336,937 to 337,185 GFF2815 GFF2816 - Septum site-determining protein MinC, at 337,356 to 338,063 GFF2816 GFF2817 - Septum site-determining protein MinD, at 338,087 to 338,899 GFF2817 GFF2818 - Cell division topological specificity factor MinE, at 338,903 to 339,169 GFF2818 Position (kb) 337 338 339Strain fitness (log2 ratio) -2 -1 0 1at 336.383 kb on + strand, within GFF2814at 336.384 kb on - strand, within GFF2814at 336.453 kb on - strand, within GFF2814at 336.582 kb on + strand, within GFF2814at 336.617 kb on + strand, within GFF2814at 336.617 kb on + strand, within GFF2814at 336.617 kb on + strand, within GFF2814at 336.621 kb on + strand, within GFF2814at 336.621 kb on + strand, within GFF2814at 336.621 kb on + strand, within GFF2814at 336.621 kb on + strand, within GFF2814at 337.215 kb on - strandat 337.505 kb on + strand, within GFF2816

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI
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336,383 + GFF2814 0.23 -0.4
336,384 - GFF2814 0.24 +1.3
336,453 - GFF2814 0.34 +0.4
336,582 + GFF2814 0.54 -0.2
336,617 + GFF2814 0.59 +0.7
336,617 + GFF2814 0.59 -1.2
336,617 + GFF2814 0.59 -1.1
336,621 + GFF2814 0.60 -2.2
336,621 + GFF2814 0.60 +0.7
336,621 + GFF2814 0.60 -1.1
336,621 + GFF2814 0.60 -0.7
337,215 - -0.1
337,505 + GFF2816 0.21 -1.4

Or see this region's nucleotide sequence