Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2727

Experiment: LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2726 and GFF2727 are separated by 479 nucleotidesGFF2727 and GFF2728 are separated by 89 nucleotidesGFF2728 and GFF2729 are separated by 73 nucleotides GFF2726 - Tryptophan synthase alpha chain (EC 4.2.1.20), at 249,890 to 250,696 GFF2726 GFF2727 - Conidiation-specific protein 10, at 251,176 to 251,358 GFF2727 GFF2728 - Protein yciF, at 251,448 to 251,951 GFF2728 GFF2729 - Protein YciE, at 252,025 to 252,531 GFF2729 Position (kb) 251 252Strain fitness (log2 ratio) -1 0 1at 250.189 kb on - strand, within GFF2726at 250.221 kb on + strand, within GFF2726at 250.221 kb on + strand, within GFF2726at 250.222 kb on - strand, within GFF2726at 250.327 kb on + strand, within GFF2726at 250.328 kb on - strand, within GFF2726at 250.927 kb on - strandat 251.173 kb on - strandat 251.367 kb on - strandat 252.033 kb on + strandat 252.159 kb on + strand, within GFF2729

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI
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250,189 - GFF2726 0.37 +0.6
250,221 + GFF2726 0.41 -1.4
250,221 + GFF2726 0.41 +0.0
250,222 - GFF2726 0.41 +0.7
250,327 + GFF2726 0.54 +1.7
250,328 - GFF2726 0.54 -0.9
250,927 - +0.4
251,173 - +0.1
251,367 - +0.6
252,033 + +0.4
252,159 + GFF2729 0.26 +0.7

Or see this region's nucleotide sequence