Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2515

Experiment: LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2514 and GFF2515 are separated by 55 nucleotidesGFF2515 and GFF2516 are separated by 731 nucleotides GFF2514 - FIG00638206: hypothetical protein, at 29,770 to 30,717 GFF2514 GFF2515 - putative outer membrane protein, at 30,773 to 31,300 GFF2515 GFF2516 - Outer membrane protein C precursor, at 32,032 to 33,150 GFF2516 Position (kb) 30 31 32Strain fitness (log2 ratio) -1 0 1 2at 29.907 kb on + strand, within GFF2514at 29.919 kb on + strand, within GFF2514at 29.919 kb on + strand, within GFF2514at 29.974 kb on - strand, within GFF2514at 29.974 kb on - strand, within GFF2514at 30.276 kb on + strand, within GFF2514at 30.277 kb on - strand, within GFF2514at 30.508 kb on - strand, within GFF2514at 30.563 kb on + strand, within GFF2514at 30.756 kb on - strandat 30.775 kb on - strandat 30.848 kb on + strand, within GFF2515at 31.175 kb on - strand, within GFF2515at 31.303 kb on + strandat 31.304 kb on - strandat 31.350 kb on + strandat 31.949 kb on + strandat 31.962 kb on + strandat 32.028 kb on + strandat 32.029 kb on - strandat 32.051 kb on + strandat 32.179 kb on - strand, within GFF2516at 32.181 kb on + strand, within GFF2516at 32.217 kb on + strand, within GFF2516

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI
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29,907 + GFF2514 0.14 -0.1
29,919 + GFF2514 0.16 -0.1
29,919 + GFF2514 0.16 +0.5
29,974 - GFF2514 0.22 +0.9
29,974 - GFF2514 0.22 +0.6
30,276 + GFF2514 0.53 -0.0
30,277 - GFF2514 0.53 +0.3
30,508 - GFF2514 0.78 -1.2
30,563 + GFF2514 0.84 +0.0
30,756 - +0.0
30,775 - -0.0
30,848 + GFF2515 0.14 -0.3
31,175 - GFF2515 0.76 +1.2
31,303 + +0.9
31,304 - +0.5
31,350 + +0.0
31,949 + -0.4
31,962 + -1.2
32,028 + -0.3
32,029 - -0.0
32,051 + -0.6
32,179 - GFF2516 0.13 +1.6
32,181 + GFF2516 0.13 -0.6
32,217 + GFF2516 0.17 +2.2

Or see this region's nucleotide sequence