Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2356

Experiment: LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2356 and GFF2357 are separated by 72 nucleotidesGFF2357 and GFF2358 overlap by 4 nucleotides GFF2356 - Bacterioferritin-associated ferredoxin, at 247 to 441 GFF2356 GFF2357 - Bacterioferritin, at 514 to 990 GFF2357 GFF2358 - Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-), at 987 to 1,454 GFF2358 Position (kb) 0 1Strain fitness (log2 ratio) -3 -2 -1 0 1at 0.250 kb on + strandat 0.264 kb on + strandat 0.271 kb on - strand, within GFF2356at 0.511 kb on - strandat 0.550 kb on - strandat 0.586 kb on + strand, within GFF2357at 0.681 kb on + strand, within GFF2357at 0.685 kb on + strand, within GFF2357at 0.685 kb on + strand, within GFF2357at 0.685 kb on + strand, within GFF2357at 0.686 kb on - strand, within GFF2357at 0.686 kb on - strand, within GFF2357at 0.686 kb on - strand, within GFF2357at 0.687 kb on + strand, within GFF2357at 0.687 kb on + strand, within GFF2357at 0.717 kb on - strand, within GFF2357at 0.833 kb on - strand, within GFF2357at 0.853 kb on + strand, within GFF2357at 0.867 kb on + strand, within GFF2357at 0.976 kb on - strandat 1.021 kb on - strandat 1.069 kb on - strand, within GFF2358at 1.190 kb on - strand, within GFF2358at 1.394 kb on - strand, within GFF2358at 1.394 kb on - strand, within GFF2358at 1.405 kb on - strand, within GFF2358at 1.405 kb on - strand, within GFF2358

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI
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250 + -0.1
264 + +0.2
271 - GFF2356 0.12 -0.3
511 - +0.0
550 - +0.1
586 + GFF2357 0.15 -0.5
681 + GFF2357 0.35 +0.3
685 + GFF2357 0.36 -0.8
685 + GFF2357 0.36 -3.7
685 + GFF2357 0.36 -0.3
686 - GFF2357 0.36 -1.5
686 - GFF2357 0.36 -0.3
686 - GFF2357 0.36 +0.9
687 + GFF2357 0.36 -0.6
687 + GFF2357 0.36 +0.3
717 - GFF2357 0.43 -0.5
833 - GFF2357 0.67 +0.4
853 + GFF2357 0.71 -1.3
867 + GFF2357 0.74 -0.0
976 - +0.3
1,021 - -0.8
1,069 - GFF2358 0.18 -1.3
1,190 - GFF2358 0.43 -0.9
1,394 - GFF2358 0.87 +1.1
1,394 - GFF2358 0.87 -0.1
1,405 - GFF2358 0.89 -0.9
1,405 - GFF2358 0.89 -0.3

Or see this region's nucleotide sequence