Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2233

Experiment: LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2232 and GFF2233 are separated by 45 nucleotidesGFF2233 and GFF2234 are separated by 43 nucleotidesGFF2234 and GFF2235 are separated by 18 nucleotides GFF2232 - Glucuronide transport protein YihP, homologous to YihO, at 26,161 to 27,543 GFF2232 GFF2233 - Alpha-glucosyltransferase YihQ, at 27,589 to 29,625 GFF2233 GFF2234 - Sugar-1-epimerase YihR, at 29,669 to 30,511 GFF2234 GFF2235 - Aldose-ketose isomerase YihS, at 30,530 to 31,771 GFF2235 Position (kb) 27 28 29 30Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 26.603 kb on - strand, within GFF2232at 26.735 kb on + strand, within GFF2232at 26.744 kb on + strand, within GFF2232at 26.747 kb on + strand, within GFF2232at 26.788 kb on - strand, within GFF2232at 26.811 kb on + strand, within GFF2232at 26.855 kb on - strand, within GFF2232at 26.855 kb on - strand, within GFF2232at 26.931 kb on + strand, within GFF2232at 26.936 kb on - strand, within GFF2232at 26.975 kb on + strand, within GFF2232at 27.030 kb on + strand, within GFF2232at 27.169 kb on - strand, within GFF2232at 27.169 kb on - strand, within GFF2232at 27.169 kb on - strand, within GFF2232at 27.228 kb on + strand, within GFF2232at 27.342 kb on + strand, within GFF2232at 27.459 kb on + strandat 27.466 kb on + strandat 27.591 kb on - strandat 27.714 kb on + strandat 27.714 kb on + strandat 27.715 kb on - strandat 27.807 kb on - strand, within GFF2233at 27.813 kb on - strand, within GFF2233at 27.824 kb on + strand, within GFF2233at 27.930 kb on + strand, within GFF2233at 27.964 kb on - strand, within GFF2233at 28.313 kb on + strand, within GFF2233at 28.314 kb on - strand, within GFF2233at 28.314 kb on - strand, within GFF2233at 28.538 kb on + strand, within GFF2233at 28.617 kb on - strand, within GFF2233at 28.626 kb on + strand, within GFF2233at 28.628 kb on + strand, within GFF2233at 28.628 kb on + strand, within GFF2233at 28.629 kb on - strand, within GFF2233at 28.689 kb on - strand, within GFF2233at 28.773 kb on + strand, within GFF2233at 28.897 kb on + strand, within GFF2233at 28.898 kb on - strand, within GFF2233at 28.932 kb on - strand, within GFF2233at 28.932 kb on - strand, within GFF2233at 28.955 kb on - strand, within GFF2233at 28.955 kb on - strand, within GFF2233at 28.965 kb on + strand, within GFF2233at 29.021 kb on + strand, within GFF2233at 29.022 kb on - strand, within GFF2233at 29.028 kb on + strand, within GFF2233at 29.028 kb on + strand, within GFF2233at 29.029 kb on - strand, within GFF2233at 29.029 kb on - strand, within GFF2233at 29.046 kb on - strand, within GFF2233at 29.048 kb on + strand, within GFF2233at 29.049 kb on - strand, within GFF2233at 29.094 kb on - strand, within GFF2233at 29.119 kb on - strand, within GFF2233at 29.214 kb on - strand, within GFF2233at 29.238 kb on - strand, within GFF2233at 29.238 kb on - strand, within GFF2233at 29.238 kb on - strand, within GFF2233at 29.241 kb on + strand, within GFF2233at 29.242 kb on - strand, within GFF2233at 29.269 kb on + strand, within GFF2233at 29.277 kb on + strand, within GFF2233at 29.443 kb on - strandat 29.460 kb on + strandat 29.461 kb on - strandat 29.743 kb on + strandat 29.812 kb on - strand, within GFF2234at 29.819 kb on + strand, within GFF2234at 29.872 kb on + strand, within GFF2234at 29.900 kb on - strand, within GFF2234at 29.911 kb on + strand, within GFF2234at 30.002 kb on + strand, within GFF2234at 30.010 kb on + strand, within GFF2234at 30.169 kb on - strand, within GFF2234at 30.216 kb on + strand, within GFF2234at 30.221 kb on - strand, within GFF2234at 30.309 kb on + strand, within GFF2234at 30.310 kb on - strand, within GFF2234at 30.315 kb on + strand, within GFF2234at 30.315 kb on + strand, within GFF2234at 30.531 kb on + strandat 30.531 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI
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26,603 - GFF2232 0.32 -0.1
26,735 + GFF2232 0.42 -0.9
26,744 + GFF2232 0.42 -0.2
26,747 + GFF2232 0.42 +0.4
26,788 - GFF2232 0.45 -0.4
26,811 + GFF2232 0.47 -1.4
26,855 - GFF2232 0.50 -0.1
26,855 - GFF2232 0.50 +1.8
26,931 + GFF2232 0.56 -0.2
26,936 - GFF2232 0.56 -0.1
26,975 + GFF2232 0.59 +0.0
27,030 + GFF2232 0.63 -1.8
27,169 - GFF2232 0.73 -1.4
27,169 - GFF2232 0.73 +0.3
27,169 - GFF2232 0.73 -0.5
27,228 + GFF2232 0.77 +0.3
27,342 + GFF2232 0.85 +0.4
27,459 + +0.5
27,466 + +1.3
27,591 - +0.6
27,714 + +0.0
27,714 + -0.9
27,715 - -2.0
27,807 - GFF2233 0.11 +0.8
27,813 - GFF2233 0.11 +0.7
27,824 + GFF2233 0.12 -0.1
27,930 + GFF2233 0.17 +0.6
27,964 - GFF2233 0.18 -1.0
28,313 + GFF2233 0.36 -2.3
28,314 - GFF2233 0.36 +0.1
28,314 - GFF2233 0.36 -2.2
28,538 + GFF2233 0.47 -0.2
28,617 - GFF2233 0.50 -0.6
28,626 + GFF2233 0.51 -0.3
28,628 + GFF2233 0.51 +0.5
28,628 + GFF2233 0.51 +0.8
28,629 - GFF2233 0.51 +0.6
28,689 - GFF2233 0.54 +0.5
28,773 + GFF2233 0.58 +0.5
28,897 + GFF2233 0.64 -2.6
28,898 - GFF2233 0.64 -0.1
28,932 - GFF2233 0.66 -0.3
28,932 - GFF2233 0.66 +0.5
28,955 - GFF2233 0.67 -2.1
28,955 - GFF2233 0.67 -1.6
28,965 + GFF2233 0.68 +0.7
29,021 + GFF2233 0.70 -2.0
29,022 - GFF2233 0.70 -0.2
29,028 + GFF2233 0.71 +1.4
29,028 + GFF2233 0.71 -0.1
29,029 - GFF2233 0.71 +1.8
29,029 - GFF2233 0.71 +1.4
29,046 - GFF2233 0.72 +1.3
29,048 + GFF2233 0.72 +0.9
29,049 - GFF2233 0.72 +0.3
29,094 - GFF2233 0.74 +1.5
29,119 - GFF2233 0.75 +0.9
29,214 - GFF2233 0.80 -1.0
29,238 - GFF2233 0.81 -1.6
29,238 - GFF2233 0.81 -2.0
29,238 - GFF2233 0.81 +3.1
29,241 + GFF2233 0.81 +1.6
29,242 - GFF2233 0.81 +0.4
29,269 + GFF2233 0.82 +2.4
29,277 + GFF2233 0.83 -3.4
29,443 - -0.4
29,460 + +0.8
29,461 - +0.3
29,743 + +0.7
29,812 - GFF2234 0.17 -0.3
29,819 + GFF2234 0.18 +0.4
29,872 + GFF2234 0.24 +0.5
29,900 - GFF2234 0.27 -0.6
29,911 + GFF2234 0.29 -0.2
30,002 + GFF2234 0.40 -0.3
30,010 + GFF2234 0.40 -0.9
30,169 - GFF2234 0.59 -0.6
30,216 + GFF2234 0.65 -0.1
30,221 - GFF2234 0.65 -0.4
30,309 + GFF2234 0.76 -0.6
30,310 - GFF2234 0.76 -0.5
30,315 + GFF2234 0.77 +1.1
30,315 + GFF2234 0.77 -0.4
30,531 + -0.5
30,531 + +0.6

Or see this region's nucleotide sequence