Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2137

Experiment: LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2135 and GFF2136 overlap by 1 nucleotidesGFF2136 and GFF2137 are separated by 8 nucleotidesGFF2137 and GFF2138 overlap by 11 nucleotides GFF2135 - Rod shape-determining protein MreC, at 23,468 to 24,520 GFF2135 GFF2136 - Rod shape-determining protein MreD, at 24,520 to 25,011 GFF2136 GFF2137 - Septum formation protein Maf, at 25,020 to 25,613 GFF2137 GFF2138 - Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-), at 25,603 to 27,072 GFF2138 Position (kb) 25 26Strain fitness (log2 ratio) -2 -1 0 1 2at 25.149 kb on + strand, within GFF2137at 25.317 kb on - strand, within GFF2137at 25.317 kb on - strand, within GFF2137at 25.419 kb on - strand, within GFF2137at 25.455 kb on - strand, within GFF2137at 25.507 kb on + strand, within GFF2137at 25.507 kb on + strand, within GFF2137at 25.508 kb on - strand, within GFF2137at 25.519 kb on - strand, within GFF2137at 25.519 kb on - strand, within GFF2137at 25.555 kb on - strandat 25.589 kb on + strandat 25.623 kb on - strandat 25.686 kb on + strandat 25.727 kb on - strandat 25.727 kb on - strandat 25.779 kb on + strand, within GFF2138at 25.821 kb on + strand, within GFF2138at 25.866 kb on + strand, within GFF2138at 26.107 kb on - strand, within GFF2138at 26.107 kb on - strand, within GFF2138at 26.190 kb on - strand, within GFF2138at 26.318 kb on - strand, within GFF2138at 26.318 kb on - strand, within GFF2138at 26.347 kb on + strand, within GFF2138at 26.367 kb on + strand, within GFF2138at 26.380 kb on + strand, within GFF2138at 26.381 kb on - strand, within GFF2138at 26.449 kb on - strand, within GFF2138at 26.449 kb on - strand, within GFF2138at 26.511 kb on - strand, within GFF2138at 26.511 kb on - strand, within GFF2138at 26.514 kb on + strand, within GFF2138at 26.514 kb on + strand, within GFF2138at 26.545 kb on - strand, within GFF2138

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI
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25,149 + GFF2137 0.22 +2.6
25,317 - GFF2137 0.50 +1.3
25,317 - GFF2137 0.50 +0.1
25,419 - GFF2137 0.67 +0.2
25,455 - GFF2137 0.73 -0.0
25,507 + GFF2137 0.82 +0.4
25,507 + GFF2137 0.82 -0.4
25,508 - GFF2137 0.82 -1.1
25,519 - GFF2137 0.84 -0.7
25,519 - GFF2137 0.84 -1.8
25,555 - -0.1
25,589 + -0.0
25,623 - +1.1
25,686 + -1.6
25,727 - -0.3
25,727 - -0.4
25,779 + GFF2138 0.12 -1.2
25,821 + GFF2138 0.15 -0.8
25,866 + GFF2138 0.18 -0.5
26,107 - GFF2138 0.34 -1.0
26,107 - GFF2138 0.34 +0.3
26,190 - GFF2138 0.40 -1.0
26,318 - GFF2138 0.49 -0.8
26,318 - GFF2138 0.49 -0.2
26,347 + GFF2138 0.51 -0.8
26,367 + GFF2138 0.52 -0.6
26,380 + GFF2138 0.53 -0.7
26,381 - GFF2138 0.53 -0.6
26,449 - GFF2138 0.58 -0.4
26,449 - GFF2138 0.58 +1.2
26,511 - GFF2138 0.62 -0.8
26,511 - GFF2138 0.62 -0.6
26,514 + GFF2138 0.62 -0.8
26,514 + GFF2138 0.62 -0.4
26,545 - GFF2138 0.64 -0.1

Or see this region's nucleotide sequence