Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1876

Experiment: LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1874 and GFF1875 are separated by 81 nucleotidesGFF1875 and GFF1876 are separated by 65 nucleotidesGFF1876 and GFF1877 are separated by 40 nucleotides GFF1874 - hypothetical protein, at 66,122 to 66,259 GFF1874 GFF1875 - Ribonuclease Z (EC 3.1.26.11), at 66,341 to 66,970 GFF1875 GFF1876 - Chemotaxis protein CheV (EC 2.7.3.-), at 67,036 to 68,037 GFF1876 GFF1877 - Von Willebrand factor type A domain protein, at 68,078 to 69,859 GFF1877 Position (kb) 67 68 69Strain fitness (log2 ratio) -1 0 1 2 3at 66.123 kb on + strandat 66.124 kb on - strandat 66.200 kb on - strand, within GFF1874at 66.283 kb on - strandat 66.324 kb on + strandat 66.326 kb on + strandat 66.641 kb on + strand, within GFF1875at 66.668 kb on + strand, within GFF1875at 66.865 kb on + strand, within GFF1875at 66.865 kb on + strand, within GFF1875at 66.969 kb on - strandat 67.032 kb on + strandat 67.033 kb on - strandat 67.120 kb on - strandat 67.163 kb on + strand, within GFF1876at 67.167 kb on + strand, within GFF1876at 67.168 kb on - strand, within GFF1876at 67.381 kb on - strand, within GFF1876at 67.439 kb on - strand, within GFF1876at 67.450 kb on - strand, within GFF1876at 67.519 kb on + strand, within GFF1876at 67.519 kb on + strand, within GFF1876at 67.905 kb on + strand, within GFF1876at 67.905 kb on + strand, within GFF1876at 67.905 kb on + strand, within GFF1876at 67.907 kb on + strand, within GFF1876at 67.907 kb on + strand, within GFF1876at 67.908 kb on - strand, within GFF1876at 67.911 kb on + strand, within GFF1876at 67.911 kb on + strand, within GFF1876at 67.912 kb on - strand, within GFF1876at 67.912 kb on - strand, within GFF1876at 67.912 kb on - strand, within GFF1876at 67.931 kb on - strand, within GFF1876at 68.054 kb on + strandat 68.141 kb on - strandat 68.192 kb on - strandat 68.686 kb on - strand, within GFF1877at 68.686 kb on - strand, within GFF1877at 68.764 kb on + strand, within GFF1877at 68.769 kb on - strand, within GFF1877at 68.773 kb on + strand, within GFF1877at 68.774 kb on - strand, within GFF1877at 68.916 kb on - strand, within GFF1877at 68.921 kb on + strand, within GFF1877at 68.922 kb on - strand, within GFF1877

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI
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66,123 + +0.6
66,124 - +0.7
66,200 - GFF1874 0.57 +1.3
66,283 - -0.5
66,324 + -0.3
66,326 + +0.7
66,641 + GFF1875 0.48 +0.7
66,668 + GFF1875 0.52 +0.7
66,865 + GFF1875 0.83 +1.1
66,865 + GFF1875 0.83 +0.7
66,969 - +1.2
67,032 + -0.3
67,033 - +0.4
67,120 - +0.3
67,163 + GFF1876 0.13 +0.0
67,167 + GFF1876 0.13 +0.6
67,168 - GFF1876 0.13 +2.4
67,381 - GFF1876 0.34 -0.8
67,439 - GFF1876 0.40 +0.4
67,450 - GFF1876 0.41 -1.4
67,519 + GFF1876 0.48 +0.0
67,519 + GFF1876 0.48 -0.2
67,905 + GFF1876 0.87 +0.7
67,905 + GFF1876 0.87 +1.1
67,905 + GFF1876 0.87 +1.4
67,907 + GFF1876 0.87 -0.3
67,907 + GFF1876 0.87 -0.7
67,908 - GFF1876 0.87 +0.2
67,911 + GFF1876 0.87 -1.5
67,911 + GFF1876 0.87 -0.1
67,912 - GFF1876 0.87 +1.0
67,912 - GFF1876 0.87 -0.4
67,912 - GFF1876 0.87 +0.6
67,931 - GFF1876 0.89 -0.4
68,054 + -0.5
68,141 - +0.3
68,192 - +0.1
68,686 - GFF1877 0.34 +0.7
68,686 - GFF1877 0.34 +0.1
68,764 + GFF1877 0.38 +0.7
68,769 - GFF1877 0.39 +0.3
68,773 + GFF1877 0.39 +0.7
68,774 - GFF1877 0.39 +2.8
68,916 - GFF1877 0.47 +1.1
68,921 + GFF1877 0.47 +0.4
68,922 - GFF1877 0.47 -0.3

Or see this region's nucleotide sequence