Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1627

Experiment: LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1625 and GFF1626 are separated by 93 nucleotidesGFF1626 and GFF1627 are separated by 67 nucleotidesGFF1627 and GFF1628 are separated by 130 nucleotides GFF1625 - FIG004088: inner membrane protein YebE, at 10,490 to 11,149 GFF1625 GFF1626 - FIG01200701: possible membrane protein, at 11,243 to 11,596 GFF1626 GFF1627 - DNA damage-inducible gene in SOS regulon, dependent on cyclic AMP and H-NS, at 11,664 to 11,954 GFF1627 GFF1628 - Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-), at 12,085 to 13,263 GFF1628 Position (kb) 11 12Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 10.795 kb on + strand, within GFF1625at 10.795 kb on + strand, within GFF1625at 10.908 kb on - strand, within GFF1625at 10.912 kb on + strand, within GFF1625at 10.920 kb on + strand, within GFF1625at 10.984 kb on - strand, within GFF1625at 11.012 kb on - strand, within GFF1625at 11.163 kb on + strandat 11.163 kb on + strandat 11.254 kb on + strandat 11.254 kb on + strandat 11.762 kb on + strand, within GFF1627at 11.763 kb on - strand, within GFF1627at 11.763 kb on - strand, within GFF1627at 11.936 kb on - strandat 11.936 kb on - strandat 11.936 kb on - strandat 11.936 kb on - strandat 11.936 kb on - strandat 12.071 kb on - strandat 12.071 kb on - strandat 12.093 kb on - strandat 12.134 kb on + strandat 12.134 kb on + strandat 12.262 kb on - strand, within GFF1628at 12.265 kb on - strand, within GFF1628at 12.297 kb on + strand, within GFF1628at 12.316 kb on + strand, within GFF1628at 12.316 kb on + strand, within GFF1628at 12.319 kb on - strand, within GFF1628at 12.319 kb on - strand, within GFF1628at 12.622 kb on + strand, within GFF1628at 12.622 kb on + strand, within GFF1628at 12.773 kb on - strand, within GFF1628at 12.849 kb on - strand, within GFF1628

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI
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10,795 + GFF1625 0.46 +0.3
10,795 + GFF1625 0.46 -0.6
10,908 - GFF1625 0.63 +0.2
10,912 + GFF1625 0.64 +0.9
10,920 + GFF1625 0.65 -0.7
10,984 - GFF1625 0.75 -0.1
11,012 - GFF1625 0.79 +0.6
11,163 + -1.4
11,163 + +0.4
11,254 + +0.4
11,254 + +1.6
11,762 + GFF1627 0.34 +0.9
11,763 - GFF1627 0.34 +0.1
11,763 - GFF1627 0.34 +1.6
11,936 - -0.5
11,936 - -2.9
11,936 - +0.6
11,936 - -1.0
11,936 - -1.1
12,071 - -0.4
12,071 - +0.5
12,093 - +1.4
12,134 + -1.4
12,134 + +0.5
12,262 - GFF1628 0.15 -0.3
12,265 - GFF1628 0.15 -0.1
12,297 + GFF1628 0.18 +3.1
12,316 + GFF1628 0.20 -0.5
12,316 + GFF1628 0.20 +0.1
12,319 - GFF1628 0.20 +0.6
12,319 - GFF1628 0.20 +0.1
12,622 + GFF1628 0.46 -1.2
12,622 + GFF1628 0.46 -0.1
12,773 - GFF1628 0.58 +0.3
12,849 - GFF1628 0.65 -0.2

Or see this region's nucleotide sequence