Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1538

Experiment: LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1537 and GFF1538 are separated by 509 nucleotidesGFF1538 and GFF1539 overlap by 4 nucleotidesGFF1539 and GFF1540 overlap by 4 nucleotides GFF1537 - Glycerate kinase (EC 2.7.1.31), at 42,203 to 43,348 GFF1537 GFF1538 - FIG01045316: hypothetical protein, at 43,858 to 43,977 GFF1538 GFF1539 - FIG01045316: hypothetical protein, at 43,974 to 44,093 GFF1539 GFF1540 - FIG01045316: hypothetical protein, at 44,090 to 44,209 GFF1540 Position (kb) 43 44Strain fitness (log2 ratio) -1 0 1 2at 42.888 kb on - strand, within GFF1537at 42.996 kb on + strand, within GFF1537at 43.090 kb on + strand, within GFF1537at 43.151 kb on - strand, within GFF1537at 43.197 kb on + strand, within GFF1537at 43.197 kb on + strand, within GFF1537at 43.198 kb on - strand, within GFF1537at 43.200 kb on + strand, within GFF1537at 43.200 kb on + strand, within GFF1537at 43.200 kb on + strand, within GFF1537at 43.200 kb on + strand, within GFF1537at 43.201 kb on - strand, within GFF1537at 43.201 kb on - strand, within GFF1537at 43.201 kb on - strand, within GFF1537at 43.201 kb on - strand, within GFF1537at 43.286 kb on - strandat 43.941 kb on + strand, within GFF1538at 44.233 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI
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42,888 - GFF1537 0.60 -1.2
42,996 + GFF1537 0.69 -0.0
43,090 + GFF1537 0.77 +0.5
43,151 - GFF1537 0.83 -1.5
43,197 + GFF1537 0.87 +0.5
43,197 + GFF1537 0.87 -0.5
43,198 - GFF1537 0.87 -0.2
43,200 + GFF1537 0.87 +0.3
43,200 + GFF1537 0.87 -0.8
43,200 + GFF1537 0.87 +0.6
43,200 + GFF1537 0.87 -0.5
43,201 - GFF1537 0.87 +2.7
43,201 - GFF1537 0.87 -0.1
43,201 - GFF1537 0.87 -0.2
43,201 - GFF1537 0.87 +0.2
43,286 - -0.1
43,941 + GFF1538 0.69 -1.0
44,233 - +0.0

Or see this region's nucleotide sequence