Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1190

Experiment: LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1188 and GFF1189 are separated by 19 nucleotidesGFF1189 and GFF1190 are separated by 54 nucleotidesGFF1190 and GFF1191 are separated by 114 nucleotidesGFF1191 and GFF1192 are separated by 51 nucleotidesGFF1192 and GFF1193 are separated by 429 nucleotides GFF1188 - IncF plasmid conjugative transfer DNA-nicking and unwinding protein TraI, at 33,566 to 38,824 GFF1188 GFF1189 - IncF plasmid conjugative transfer pilin acetylase TraX, at 38,844 to 39,584 GFF1189 GFF1190 - IncF plasmid conjugative transfer fertility inhibition protein FinO, at 39,639 to 40,202 GFF1190 GFF1191 - putative cytoplasmic protein, at 40,317 to 40,601 GFF1191 GFF1192 - putative cytoplasmic protein, at 40,653 to 40,769 GFF1192 GFF1193 - Endonuclease (EC 3.1.-.-), at 41,199 to 41,378 GFF1193 Position (kb) 39 40 41Strain fitness (log2 ratio) -2 -1 0 1 2at 38.867 kb on + strandat 38.868 kb on - strandat 38.985 kb on - strand, within GFF1189at 39.083 kb on + strand, within GFF1189at 39.083 kb on + strand, within GFF1189at 39.084 kb on - strand, within GFF1189at 39.084 kb on - strand, within GFF1189at 39.171 kb on + strand, within GFF1189at 39.266 kb on - strand, within GFF1189at 39.349 kb on - strand, within GFF1189at 39.475 kb on + strand, within GFF1189at 39.543 kb on + strandat 39.543 kb on + strandat 39.633 kb on + strandat 39.633 kb on + strandat 39.633 kb on + strandat 39.633 kb on + strandat 39.633 kb on + strandat 39.633 kb on + strandat 39.723 kb on - strand, within GFF1190at 39.723 kb on - strand, within GFF1190at 39.997 kb on + strand, within GFF1190at 40.035 kb on + strand, within GFF1190at 40.035 kb on + strand, within GFF1190at 40.069 kb on - strand, within GFF1190at 40.084 kb on - strand, within GFF1190at 40.084 kb on - strand, within GFF1190at 40.097 kb on + strand, within GFF1190at 40.097 kb on + strand, within GFF1190at 40.097 kb on + strand, within GFF1190at 40.097 kb on + strand, within GFF1190at 40.100 kb on + strand, within GFF1190at 40.120 kb on - strand, within GFF1190at 40.218 kb on + strandat 40.219 kb on - strandat 40.219 kb on - strandat 40.220 kb on + strandat 40.220 kb on + strandat 40.314 kb on + strandat 40.322 kb on + strandat 40.322 kb on + strandat 40.323 kb on - strandat 40.323 kb on - strandat 40.323 kb on - strandat 40.342 kb on + strandat 40.455 kb on + strand, within GFF1191at 40.455 kb on + strand, within GFF1191at 40.552 kb on + strand, within GFF1191at 40.552 kb on + strand, within GFF1191at 40.580 kb on + strandat 40.581 kb on - strandat 40.613 kb on - strandat 40.743 kb on - strand, within GFF1192at 40.861 kb on + strandat 40.866 kb on + strandat 40.866 kb on + strandat 40.867 kb on - strandat 40.876 kb on + strandat 40.878 kb on + strandat 40.889 kb on + strandat 40.889 kb on + strandat 40.966 kb on - strandat 40.966 kb on - strandat 41.051 kb on + strandat 41.051 kb on + strandat 41.051 kb on + strandat 41.052 kb on - strandat 41.052 kb on - strandat 41.070 kb on + strandat 41.105 kb on + strandat 41.105 kb on + strandat 41.106 kb on - strandat 41.109 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI
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38,867 + +0.3
38,868 - -0.8
38,985 - GFF1189 0.19 +1.1
39,083 + GFF1189 0.32 -0.3
39,083 + GFF1189 0.32 +0.2
39,084 - GFF1189 0.32 -0.1
39,084 - GFF1189 0.32 -0.7
39,171 + GFF1189 0.44 +0.1
39,266 - GFF1189 0.57 -0.6
39,349 - GFF1189 0.68 +1.0
39,475 + GFF1189 0.85 +1.2
39,543 + -0.1
39,543 + +1.2
39,633 + +0.2
39,633 + -1.5
39,633 + +0.7
39,633 + +0.2
39,633 + +0.9
39,633 + +1.3
39,723 - GFF1190 0.15 +1.4
39,723 - GFF1190 0.15 +0.3
39,997 + GFF1190 0.63 +2.0
40,035 + GFF1190 0.70 +0.8
40,035 + GFF1190 0.70 +1.7
40,069 - GFF1190 0.76 -1.9
40,084 - GFF1190 0.79 -2.3
40,084 - GFF1190 0.79 -0.1
40,097 + GFF1190 0.81 +1.3
40,097 + GFF1190 0.81 +0.5
40,097 + GFF1190 0.81 +0.2
40,097 + GFF1190 0.81 +1.0
40,100 + GFF1190 0.82 +0.3
40,120 - GFF1190 0.85 +0.8
40,218 + +0.4
40,219 - -1.5
40,219 - -0.3
40,220 + +1.0
40,220 + -0.0
40,314 + +0.2
40,322 + -1.1
40,322 + +0.0
40,323 - -1.7
40,323 - -1.3
40,323 - +0.4
40,342 + -0.4
40,455 + GFF1191 0.48 +1.1
40,455 + GFF1191 0.48 -1.1
40,552 + GFF1191 0.82 +0.6
40,552 + GFF1191 0.82 +0.2
40,580 + +0.6
40,581 - +0.7
40,613 - -0.1
40,743 - GFF1192 0.77 -1.3
40,861 + +0.2
40,866 + +0.7
40,866 + +0.5
40,867 - -0.3
40,876 + -0.6
40,878 + +0.6
40,889 + +1.0
40,889 + -1.8
40,966 - +0.1
40,966 - +2.7
41,051 + +0.3
41,051 + -0.8
41,051 + -0.3
41,052 - +1.2
41,052 - +0.1
41,070 + +0.6
41,105 + +0.3
41,105 + -1.9
41,106 - +1.2
41,109 - +0.4

Or see this region's nucleotide sequence