Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1048

Experiment: LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1046 and GFF1047 are separated by 37 nucleotidesGFF1047 and GFF1048 overlap by 4 nucleotidesGFF1048 and GFF1049 are separated by 13 nucleotidesGFF1049 and GFF1050 are separated by 77 nucleotides GFF1046 - Purine nucleoside phosphorylase (EC 2.4.2.1), at 228,493 to 229,212 GFF1046 GFF1047 - Beta-fimbriae probable major subunit, at 229,250 to 229,822 GFF1047 GFF1048 - Beta-fimbriae usher protein, at 229,819 to 232,227 GFF1048 GFF1049 - Beta-fimbriae chaperone protein, at 232,241 to 232,948 GFF1049 GFF1050 - Beta-fimbriae probable major subunit, at 233,026 to 233,715 GFF1050 Position (kb) 229 230 231 232 233Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 228.855 kb on + strand, within GFF1046at 228.974 kb on - strand, within GFF1046at 229.028 kb on + strand, within GFF1046at 229.047 kb on + strand, within GFF1046at 229.117 kb on - strand, within GFF1046at 229.204 kb on - strandat 229.286 kb on + strandat 229.286 kb on + strandat 229.286 kb on + strandat 229.287 kb on - strandat 229.287 kb on - strandat 229.341 kb on - strand, within GFF1047at 229.385 kb on - strand, within GFF1047at 229.388 kb on - strand, within GFF1047at 229.411 kb on + strand, within GFF1047at 229.411 kb on + strand, within GFF1047at 229.419 kb on - strand, within GFF1047at 229.489 kb on - strand, within GFF1047at 229.502 kb on + strand, within GFF1047at 229.503 kb on - strand, within GFF1047at 229.597 kb on + strand, within GFF1047at 229.597 kb on + strand, within GFF1047at 229.767 kb on - strandat 229.781 kb on - strandat 229.787 kb on + strandat 229.787 kb on + strandat 229.789 kb on + strandat 229.789 kb on + strandat 229.928 kb on - strandat 229.992 kb on - strandat 229.996 kb on - strandat 230.009 kb on - strandat 230.009 kb on - strandat 230.053 kb on + strandat 230.053 kb on + strandat 230.179 kb on - strand, within GFF1048at 230.317 kb on - strand, within GFF1048at 230.329 kb on - strand, within GFF1048at 230.330 kb on + strand, within GFF1048at 230.514 kb on - strand, within GFF1048at 230.544 kb on + strand, within GFF1048at 230.586 kb on + strand, within GFF1048at 230.588 kb on + strand, within GFF1048at 230.589 kb on - strand, within GFF1048at 230.612 kb on - strand, within GFF1048at 230.612 kb on - strand, within GFF1048at 230.641 kb on - strand, within GFF1048at 230.653 kb on - strand, within GFF1048at 230.749 kb on - strand, within GFF1048at 230.790 kb on - strand, within GFF1048at 230.808 kb on + strand, within GFF1048at 230.809 kb on - strand, within GFF1048at 230.835 kb on + strand, within GFF1048at 230.865 kb on - strand, within GFF1048at 230.938 kb on - strand, within GFF1048at 230.969 kb on - strand, within GFF1048at 231.046 kb on - strand, within GFF1048at 231.086 kb on + strand, within GFF1048at 231.196 kb on + strand, within GFF1048at 231.197 kb on - strand, within GFF1048at 231.197 kb on - strand, within GFF1048at 231.197 kb on - strand, within GFF1048at 231.218 kb on - strand, within GFF1048at 231.310 kb on - strand, within GFF1048at 231.352 kb on - strand, within GFF1048at 231.435 kb on + strand, within GFF1048at 231.449 kb on - strand, within GFF1048at 231.486 kb on + strand, within GFF1048at 231.520 kb on + strand, within GFF1048at 231.594 kb on + strand, within GFF1048at 231.594 kb on + strand, within GFF1048at 231.595 kb on - strand, within GFF1048at 231.595 kb on - strand, within GFF1048at 231.595 kb on - strand, within GFF1048at 231.595 kb on - strand, within GFF1048at 231.598 kb on + strand, within GFF1048at 231.599 kb on - strand, within GFF1048at 231.599 kb on - strand, within GFF1048at 231.627 kb on + strand, within GFF1048at 231.673 kb on + strand, within GFF1048at 231.751 kb on - strand, within GFF1048at 231.757 kb on - strand, within GFF1048at 231.799 kb on + strand, within GFF1048at 231.802 kb on + strand, within GFF1048at 231.808 kb on - strand, within GFF1048at 231.870 kb on + strand, within GFF1048at 231.896 kb on - strand, within GFF1048at 232.058 kb on - strandat 232.202 kb on + strandat 232.202 kb on + strandat 232.203 kb on - strandat 232.203 kb on - strandat 232.203 kb on - strandat 232.203 kb on - strandat 232.205 kb on - strandat 232.340 kb on - strand, within GFF1049at 232.511 kb on - strand, within GFF1049at 232.541 kb on + strand, within GFF1049at 232.630 kb on - strand, within GFF1049at 232.673 kb on + strand, within GFF1049at 232.766 kb on - strand, within GFF1049at 233.038 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI
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228,855 + GFF1046 0.50 -1.0
228,974 - GFF1046 0.67 +0.4
229,028 + GFF1046 0.74 -1.0
229,047 + GFF1046 0.77 -1.0
229,117 - GFF1046 0.87 -1.3
229,204 - +0.6
229,286 + +0.1
229,286 + +0.7
229,286 + +0.3
229,287 - -0.1
229,287 - +1.4
229,341 - GFF1047 0.16 +1.5
229,385 - GFF1047 0.24 -0.1
229,388 - GFF1047 0.24 -1.0
229,411 + GFF1047 0.28 +0.2
229,411 + GFF1047 0.28 +1.0
229,419 - GFF1047 0.29 +0.2
229,489 - GFF1047 0.42 -0.3
229,502 + GFF1047 0.44 +0.1
229,503 - GFF1047 0.44 -1.7
229,597 + GFF1047 0.61 +0.2
229,597 + GFF1047 0.61 +0.9
229,767 - +0.3
229,781 - -0.4
229,787 + -1.2
229,787 + -1.0
229,789 + +0.2
229,789 + -1.0
229,928 - -1.0
229,992 - +1.3
229,996 - +2.2
230,009 - +0.0
230,009 - +0.4
230,053 + -0.2
230,053 + +1.8
230,179 - GFF1048 0.15 -1.8
230,317 - GFF1048 0.21 -0.5
230,329 - GFF1048 0.21 +0.0
230,330 + GFF1048 0.21 +0.1
230,514 - GFF1048 0.29 +1.0
230,544 + GFF1048 0.30 +2.2
230,586 + GFF1048 0.32 +1.3
230,588 + GFF1048 0.32 -2.2
230,589 - GFF1048 0.32 -0.5
230,612 - GFF1048 0.33 -0.4
230,612 - GFF1048 0.33 +1.0
230,641 - GFF1048 0.34 +0.3
230,653 - GFF1048 0.35 +0.5
230,749 - GFF1048 0.39 +0.5
230,790 - GFF1048 0.40 -2.8
230,808 + GFF1048 0.41 +0.6
230,809 - GFF1048 0.41 -0.5
230,835 + GFF1048 0.42 +1.5
230,865 - GFF1048 0.43 +3.0
230,938 - GFF1048 0.46 +0.8
230,969 - GFF1048 0.48 -0.3
231,046 - GFF1048 0.51 +0.4
231,086 + GFF1048 0.53 +1.3
231,196 + GFF1048 0.57 +0.6
231,197 - GFF1048 0.57 -1.6
231,197 - GFF1048 0.57 +0.7
231,197 - GFF1048 0.57 +0.8
231,218 - GFF1048 0.58 +0.9
231,310 - GFF1048 0.62 -0.8
231,352 - GFF1048 0.64 +0.4
231,435 + GFF1048 0.67 -0.1
231,449 - GFF1048 0.68 -0.5
231,486 + GFF1048 0.69 +0.1
231,520 + GFF1048 0.71 +1.0
231,594 + GFF1048 0.74 +0.1
231,594 + GFF1048 0.74 +0.7
231,595 - GFF1048 0.74 -1.4
231,595 - GFF1048 0.74 +0.1
231,595 - GFF1048 0.74 -0.1
231,595 - GFF1048 0.74 +1.0
231,598 + GFF1048 0.74 -0.1
231,599 - GFF1048 0.74 -0.9
231,599 - GFF1048 0.74 -0.3
231,627 + GFF1048 0.75 -1.8
231,673 + GFF1048 0.77 -0.3
231,751 - GFF1048 0.80 +0.1
231,757 - GFF1048 0.80 -1.8
231,799 + GFF1048 0.82 +0.2
231,802 + GFF1048 0.82 +0.9
231,808 - GFF1048 0.83 +0.7
231,870 + GFF1048 0.85 +2.7
231,896 - GFF1048 0.86 +1.2
232,058 - -0.8
232,202 + -0.4
232,202 + +0.4
232,203 - +0.8
232,203 - +0.3
232,203 - -0.2
232,203 - +0.0
232,205 - -0.1
232,340 - GFF1049 0.14 -2.1
232,511 - GFF1049 0.38 -1.4
232,541 + GFF1049 0.42 +0.1
232,630 - GFF1049 0.55 +0.4
232,673 + GFF1049 0.61 -0.7
232,766 - GFF1049 0.74 -1.4
233,038 - -0.0

Or see this region's nucleotide sequence