Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt recO and era are separated by 11 nucleotides era and rnc overlap by 4 nucleotides rnc and lepB are separated by 271 nucleotides
b2565: recO - DNA repair protein RecO (NCBI), at 2,699,763 to 2,700,491
recO
b2566: era - GTP-binding protein Era (NCBI), at 2,700,503 to 2,701,408
era
b2567: rnc - ribonuclease III (NCBI), at 2,701,405 to 2,702,085
rnc
b2568: lepB - leader peptidase (signal peptidase I) (NCBI), at 2,702,357 to 2,703,331
lepB
Position (kb)
2701
2702
2703 Strain fitness (log2 ratio)
-2
-1
0
1 at 2700.467 kb on - strand at 2701.692 kb on - strand, within rnc at 2702.009 kb on - strand, within rnc at 2702.100 kb on - strand at 2702.134 kb on - strand at 2702.144 kb on - strand at 2702.144 kb on - strand at 2702.147 kb on - strand at 2702.147 kb on - strand at 2702.164 kb on - strand at 2702.164 kb on - strand at 2702.191 kb on - strand at 2702.191 kb on - strand at 2702.191 kb on - strand at 2702.229 kb on - strand at 2702.303 kb on + strand at 2702.368 kb on + strand at 2702.368 kb on + strand at 2702.439 kb on - strand at 2702.448 kb on - strand at 2702.448 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,700,467 - +0.5 2,701,692 - rnc b2567 0.42 -0.6 2,702,009 - rnc b2567 0.89 -2.1 2,702,100 - +0.3 2,702,134 - +0.9 2,702,144 - -0.1 2,702,144 - -1.1 2,702,147 - +0.8 2,702,147 - +0.4 2,702,164 - +0.2 2,702,164 - -0.4 2,702,191 - -0.1 2,702,191 - +0.5 2,702,191 - -0.0 2,702,229 - +0.1 2,702,303 + +0.3 2,702,368 + +0.7 2,702,368 + +0.6 2,702,439 - +0.3 2,702,448 - -0.6 2,702,448 - -1.8
Or see this region's nucleotide sequence