Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4165

Experiment: LB_plus_SM_buffer with ES18h1_phage 0.75 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4163 and GFF4164 are separated by 122 nucleotidesGFF4164 and GFF4165 are separated by 34 nucleotidesGFF4165 and GFF4166 are separated by 84 nucleotides GFF4163 - NAD kinase (EC 2.7.1.23), at 54,319 to 55,197 GFF4163 GFF4164 - Heat shock protein GrpE, at 55,320 to 55,910 GFF4164 GFF4165 - FIG074102: hypothetical protein, at 55,945 to 56,586 GFF4165 GFF4166 - Hemolysins and related proteins containing CBS domains, at 56,671 to 57,912 GFF4166 Position (kb) 55 56 57Strain fitness (log2 ratio) -2 -1 0 1 2 3at 55.909 kb on - strandat 56.032 kb on - strand, within GFF4165at 56.033 kb on + strand, within GFF4165at 56.295 kb on + strand, within GFF4165at 56.533 kb on + strandat 56.538 kb on - strandat 56.602 kb on + strandat 56.602 kb on + strandat 56.731 kb on - strandat 56.751 kb on + strandat 56.755 kb on + strandat 56.755 kb on + strandat 56.756 kb on - strandat 56.907 kb on + strand, within GFF4166at 56.998 kb on - strand, within GFF4166at 57.119 kb on + strand, within GFF4166at 57.119 kb on + strand, within GFF4166at 57.207 kb on + strand, within GFF4166at 57.384 kb on + strand, within GFF4166at 57.384 kb on + strand, within GFF4166at 57.436 kb on + strand, within GFF4166at 57.436 kb on + strand, within GFF4166at 57.437 kb on - strand, within GFF4166at 57.519 kb on + strand, within GFF4166at 57.519 kb on + strand, within GFF4166at 57.523 kb on + strand, within GFF4166at 57.523 kb on + strand, within GFF4166at 57.582 kb on - strand, within GFF4166

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with ES18h1_phage 0.75 MOI
remove
55,909 - +3.0
56,032 - GFF4165 0.14 +0.6
56,033 + GFF4165 0.14 -0.7
56,295 + GFF4165 0.55 -2.0
56,533 + -0.5
56,538 - -0.1
56,602 + -0.4
56,602 + -0.5
56,731 - +1.5
56,751 + -0.5
56,755 + +0.4
56,755 + +0.3
56,756 - -0.6
56,907 + GFF4166 0.19 -1.7
56,998 - GFF4166 0.26 +0.5
57,119 + GFF4166 0.36 -0.2
57,119 + GFF4166 0.36 -0.2
57,207 + GFF4166 0.43 -0.4
57,384 + GFF4166 0.57 +0.3
57,384 + GFF4166 0.57 +0.3
57,436 + GFF4166 0.62 -0.3
57,436 + GFF4166 0.62 -0.9
57,437 - GFF4166 0.62 +1.6
57,519 + GFF4166 0.68 -0.4
57,519 + GFF4166 0.68 +0.2
57,523 + GFF4166 0.69 +0.0
57,523 + GFF4166 0.69 -0.8
57,582 - GFF4166 0.73 +0.3

Or see this region's nucleotide sequence