Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3691

Experiment: LB_plus_SM_buffer with ES18h1_phage 0.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3689 and GFF3690 are separated by 263 nucleotidesGFF3690 and GFF3691 overlap by 4 nucleotidesGFF3691 and GFF3692 are separated by 98 nucleotides GFF3689 - Asparaginyl-tRNA synthetase (EC 6.1.1.22), at 43,079 to 44,416 GFF3689 GFF3690 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 44,680 to 45,141 GFF3690 GFF3691 - FIG01047584: hypothetical protein, at 45,138 to 45,359 GFF3691 GFF3692 - Threonine dehydratase (EC 4.3.1.19), at 45,458 to 46,672 GFF3692 Position (kb) 45 46Strain fitness (log2 ratio) -1 0 1at 44.846 kb on + strand, within GFF3690at 44.846 kb on + strand, within GFF3690at 44.847 kb on - strand, within GFF3690at 44.847 kb on - strand, within GFF3690at 44.847 kb on - strand, within GFF3690at 45.880 kb on - strand, within GFF3692at 45.975 kb on - strand, within GFF3692at 46.088 kb on + strand, within GFF3692

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with ES18h1_phage 0.75 MOI
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44,846 + GFF3690 0.36 +0.1
44,846 + GFF3690 0.36 +0.3
44,847 - GFF3690 0.36 +0.1
44,847 - GFF3690 0.36 +0.7
44,847 - GFF3690 0.36 +0.5
45,880 - GFF3692 0.35 -0.4
45,975 - GFF3692 0.43 +0.3
46,088 + GFF3692 0.52 -0.2

Or see this region's nucleotide sequence