Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2234

Experiment: LB_plus_SM_buffer with ES18h1_phage 0.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2233 and GFF2234 are separated by 43 nucleotidesGFF2234 and GFF2235 are separated by 18 nucleotides GFF2233 - Alpha-glucosyltransferase YihQ, at 27,589 to 29,625 GFF2233 GFF2234 - Sugar-1-epimerase YihR, at 29,669 to 30,511 GFF2234 GFF2235 - Aldose-ketose isomerase YihS, at 30,530 to 31,771 GFF2235 Position (kb) 29 30 31Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 28.689 kb on - strand, within GFF2233at 28.773 kb on + strand, within GFF2233at 28.897 kb on + strand, within GFF2233at 28.898 kb on - strand, within GFF2233at 28.932 kb on - strand, within GFF2233at 28.932 kb on - strand, within GFF2233at 28.955 kb on - strand, within GFF2233at 28.955 kb on - strand, within GFF2233at 28.965 kb on + strand, within GFF2233at 29.021 kb on + strand, within GFF2233at 29.022 kb on - strand, within GFF2233at 29.028 kb on + strand, within GFF2233at 29.028 kb on + strand, within GFF2233at 29.029 kb on - strand, within GFF2233at 29.029 kb on - strand, within GFF2233at 29.046 kb on - strand, within GFF2233at 29.048 kb on + strand, within GFF2233at 29.049 kb on - strand, within GFF2233at 29.094 kb on - strand, within GFF2233at 29.119 kb on - strand, within GFF2233at 29.214 kb on - strand, within GFF2233at 29.238 kb on - strand, within GFF2233at 29.238 kb on - strand, within GFF2233at 29.238 kb on - strand, within GFF2233at 29.241 kb on + strand, within GFF2233at 29.242 kb on - strand, within GFF2233at 29.269 kb on + strand, within GFF2233at 29.277 kb on + strand, within GFF2233at 29.443 kb on - strandat 29.460 kb on + strandat 29.461 kb on - strandat 29.743 kb on + strandat 29.812 kb on - strand, within GFF2234at 29.819 kb on + strand, within GFF2234at 29.872 kb on + strand, within GFF2234at 29.900 kb on - strand, within GFF2234at 29.911 kb on + strand, within GFF2234at 30.002 kb on + strand, within GFF2234at 30.010 kb on + strand, within GFF2234at 30.169 kb on - strand, within GFF2234at 30.216 kb on + strand, within GFF2234at 30.221 kb on - strand, within GFF2234at 30.309 kb on + strand, within GFF2234at 30.310 kb on - strand, within GFF2234at 30.315 kb on + strand, within GFF2234at 30.315 kb on + strand, within GFF2234at 30.531 kb on + strandat 30.531 kb on + strandat 30.627 kb on + strandat 30.627 kb on + strandat 30.632 kb on - strandat 30.632 kb on - strandat 30.708 kb on + strand, within GFF2235at 30.724 kb on + strand, within GFF2235at 30.724 kb on + strand, within GFF2235at 30.725 kb on - strand, within GFF2235at 30.725 kb on - strand, within GFF2235at 30.843 kb on - strand, within GFF2235at 30.848 kb on - strand, within GFF2235at 30.853 kb on + strand, within GFF2235at 31.072 kb on + strand, within GFF2235at 31.073 kb on - strand, within GFF2235at 31.081 kb on + strand, within GFF2235at 31.082 kb on - strand, within GFF2235at 31.218 kb on + strand, within GFF2235at 31.249 kb on + strand, within GFF2235at 31.338 kb on + strand, within GFF2235at 31.356 kb on - strand, within GFF2235at 31.460 kb on + strand, within GFF2235

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with ES18h1_phage 0.75 MOI
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28,689 - GFF2233 0.54 +0.5
28,773 + GFF2233 0.58 +2.6
28,897 + GFF2233 0.64 +0.4
28,898 - GFF2233 0.64 +0.2
28,932 - GFF2233 0.66 +0.4
28,932 - GFF2233 0.66 -1.0
28,955 - GFF2233 0.67 +0.6
28,955 - GFF2233 0.67 +3.7
28,965 + GFF2233 0.68 -0.7
29,021 + GFF2233 0.70 -1.8
29,022 - GFF2233 0.70 +2.7
29,028 + GFF2233 0.71 -0.5
29,028 + GFF2233 0.71 -0.7
29,029 - GFF2233 0.71 +0.6
29,029 - GFF2233 0.71 -0.1
29,046 - GFF2233 0.72 +1.6
29,048 + GFF2233 0.72 +0.0
29,049 - GFF2233 0.72 -1.0
29,094 - GFF2233 0.74 +0.4
29,119 - GFF2233 0.75 +2.3
29,214 - GFF2233 0.80 +0.7
29,238 - GFF2233 0.81 -1.3
29,238 - GFF2233 0.81 -1.8
29,238 - GFF2233 0.81 -0.5
29,241 + GFF2233 0.81 -1.3
29,242 - GFF2233 0.81 -0.2
29,269 + GFF2233 0.82 +1.5
29,277 + GFF2233 0.83 +0.2
29,443 - +0.5
29,460 + +0.4
29,461 - -0.5
29,743 + +0.0
29,812 - GFF2234 0.17 -1.1
29,819 + GFF2234 0.18 -0.5
29,872 + GFF2234 0.24 +0.2
29,900 - GFF2234 0.27 -0.7
29,911 + GFF2234 0.29 +2.2
30,002 + GFF2234 0.40 +5.3
30,010 + GFF2234 0.40 +0.0
30,169 - GFF2234 0.59 -0.9
30,216 + GFF2234 0.65 -0.3
30,221 - GFF2234 0.65 -0.0
30,309 + GFF2234 0.76 +0.7
30,310 - GFF2234 0.76 +0.9
30,315 + GFF2234 0.77 +1.1
30,315 + GFF2234 0.77 -1.7
30,531 + +2.4
30,531 + -2.3
30,627 + -0.3
30,627 + +0.7
30,632 - +2.5
30,632 - -0.7
30,708 + GFF2235 0.14 +0.6
30,724 + GFF2235 0.16 -0.9
30,724 + GFF2235 0.16 -1.3
30,725 - GFF2235 0.16 -0.6
30,725 - GFF2235 0.16 -1.1
30,843 - GFF2235 0.25 +1.1
30,848 - GFF2235 0.26 -0.7
30,853 + GFF2235 0.26 -2.1
31,072 + GFF2235 0.44 -0.1
31,073 - GFF2235 0.44 +0.2
31,081 + GFF2235 0.44 +2.6
31,082 - GFF2235 0.44 +0.1
31,218 + GFF2235 0.55 -1.9
31,249 + GFF2235 0.58 -1.4
31,338 + GFF2235 0.65 +0.5
31,356 - GFF2235 0.67 -0.5
31,460 + GFF2235 0.75 +0.4

Or see this region's nucleotide sequence