Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF171

Experiment: LB_plus_SM_buffer with ES18h1_phage 0.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF170 and GFF171 are separated by 13 nucleotidesGFF171 and GFF172 are separated by 44 nucleotides GFF170 - SgrR, sugar-phosphate stress, transcriptional activator of SgrS small RNA, at 160,584 to 162,242 GFF170 GFF171 - hypothetical protein, at 162,256 to 162,375 GFF171 GFF172 - Thiamin ABC transporter, substrate-binding component, at 162,420 to 163,403 GFF172 Position (kb) 162 163Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 161.409 kb on - strand, within GFF170at 161.470 kb on + strand, within GFF170at 161.592 kb on + strand, within GFF170at 161.595 kb on + strand, within GFF170at 161.685 kb on + strand, within GFF170at 161.704 kb on + strand, within GFF170at 161.958 kb on - strand, within GFF170at 162.007 kb on + strand, within GFF170at 162.188 kb on + strandat 162.189 kb on - strandat 162.280 kb on - strand, within GFF171at 162.284 kb on + strand, within GFF171at 162.492 kb on + strandat 162.698 kb on + strand, within GFF172at 163.140 kb on + strand, within GFF172at 163.140 kb on + strand, within GFF172at 163.141 kb on - strand, within GFF172at 163.144 kb on + strand, within GFF172at 163.144 kb on + strand, within GFF172at 163.145 kb on - strand, within GFF172at 163.150 kb on + strand, within GFF172at 163.151 kb on - strand, within GFF172at 163.151 kb on - strand, within GFF172

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with ES18h1_phage 0.75 MOI
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161,409 - GFF170 0.50 +1.2
161,470 + GFF170 0.53 -0.1
161,592 + GFF170 0.61 -1.2
161,595 + GFF170 0.61 +1.5
161,685 + GFF170 0.66 +6.2
161,704 + GFF170 0.68 -0.1
161,958 - GFF170 0.83 +0.7
162,007 + GFF170 0.86 +1.1
162,188 + +3.9
162,189 - +0.1
162,280 - GFF171 0.20 +0.2
162,284 + GFF171 0.23 -1.3
162,492 + +0.1
162,698 + GFF172 0.28 -0.1
163,140 + GFF172 0.73 +0.7
163,140 + GFF172 0.73 -0.3
163,141 - GFF172 0.73 -0.9
163,144 + GFF172 0.74 +1.5
163,144 + GFF172 0.74 +0.3
163,145 - GFF172 0.74 -0.8
163,150 + GFF172 0.74 +0.6
163,151 - GFF172 0.74 -2.1
163,151 - GFF172 0.74 +0.8

Or see this region's nucleotide sequence