Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1674

Experiment: LB_plus_SM_buffer with ES18h1_phage 0.75 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1673 and GFF1674 are separated by 795 nucleotidesGFF1674 and GFF1675 are separated by 17 nucleotides GFF1673 - Flagellar transcriptional activator FlhD, at 58,138 to 58,479 GFF1673 GFF1674 - Universal stress protein C, at 59,275 to 59,703 GFF1674 GFF1675 - Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (EC 2.4.1.15), at 59,721 to 61,142 GFF1675 Position (kb) 59 60Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 58.448 kb on + strandat 58.460 kb on - strandat 58.460 kb on - strandat 58.473 kb on + strandat 58.614 kb on + strandat 58.615 kb on - strandat 58.645 kb on - strandat 58.722 kb on + strandat 58.723 kb on - strandat 58.723 kb on - strandat 58.815 kb on - strandat 59.281 kb on + strandat 59.282 kb on - strandat 59.385 kb on + strand, within GFF1674at 59.410 kb on + strand, within GFF1674at 59.411 kb on - strand, within GFF1674at 59.701 kb on + strandat 60.103 kb on - strand, within GFF1675at 60.142 kb on + strand, within GFF1675at 60.227 kb on - strand, within GFF1675at 60.475 kb on + strand, within GFF1675at 60.475 kb on + strand, within GFF1675at 60.476 kb on - strand, within GFF1675

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with ES18h1_phage 0.75 MOI
remove
58,448 + +0.7
58,460 - +0.6
58,460 - -0.4
58,473 + +1.3
58,614 + +1.3
58,615 - -0.7
58,645 - +5.2
58,722 + -0.0
58,723 - -0.1
58,723 - -0.4
58,815 - -0.5
59,281 + -0.2
59,282 - -0.5
59,385 + GFF1674 0.26 -0.1
59,410 + GFF1674 0.31 +3.0
59,411 - GFF1674 0.32 +1.7
59,701 + +0.3
60,103 - GFF1675 0.27 +0.6
60,142 + GFF1675 0.30 +0.3
60,227 - GFF1675 0.36 +1.2
60,475 + GFF1675 0.53 -0.7
60,475 + GFF1675 0.53 -1.4
60,476 - GFF1675 0.53 +0.4

Or see this region's nucleotide sequence