Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1547

Experiment: LB_plus_SM_buffer with ES18h1_phage 0.75 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1546 and GFF1547 are separated by 109 nucleotidesGFF1547 and GFF1548 are separated by 31 nucleotides GFF1546 - ABC transporter protein IroC, at 5,755 to 9,408 GFF1546 GFF1547 - Trilactone hydrolase IroD, at 9,518 to 10,762 GFF1547 GFF1548 - Periplasmic esterase IroE, at 10,794 to 11,729 GFF1548 Position (kb) 9 10 11Strain fitness (log2 ratio) -1 0 1 2 3 4at 8.578 kb on - strand, within GFF1546at 8.909 kb on + strand, within GFF1546at 9.343 kb on + strandat 9.402 kb on - strandat 9.402 kb on - strandat 9.476 kb on + strandat 9.510 kb on + strandat 9.775 kb on + strand, within GFF1547at 9.776 kb on - strand, within GFF1547at 9.803 kb on - strand, within GFF1547at 9.850 kb on + strand, within GFF1547at 9.961 kb on - strand, within GFF1547at 10.106 kb on + strand, within GFF1547at 10.255 kb on + strand, within GFF1547at 10.255 kb on + strand, within GFF1547at 10.588 kb on + strand, within GFF1547at 10.682 kb on + strandat 10.710 kb on - strandat 10.743 kb on + strandat 10.798 kb on - strandat 10.798 kb on - strandat 10.930 kb on - strand, within GFF1548at 11.038 kb on + strand, within GFF1548at 11.040 kb on + strand, within GFF1548at 11.040 kb on + strand, within GFF1548at 11.040 kb on + strand, within GFF1548at 11.040 kb on + strand, within GFF1548at 11.040 kb on + strand, within GFF1548at 11.040 kb on + strand, within GFF1548at 11.041 kb on - strand, within GFF1548at 11.041 kb on - strand, within GFF1548at 11.042 kb on + strand, within GFF1548at 11.042 kb on + strand, within GFF1548at 11.042 kb on + strand, within GFF1548at 11.042 kb on + strand, within GFF1548at 11.042 kb on + strand, within GFF1548at 11.145 kb on - strand, within GFF1548at 11.175 kb on + strand, within GFF1548at 11.176 kb on - strand, within GFF1548at 11.176 kb on - strand, within GFF1548at 11.176 kb on - strand, within GFF1548at 11.285 kb on + strand, within GFF1548at 11.286 kb on - strand, within GFF1548at 11.352 kb on + strand, within GFF1548at 11.402 kb on + strand, within GFF1548at 11.402 kb on + strand, within GFF1548at 11.403 kb on - strand, within GFF1548at 11.406 kb on + strand, within GFF1548at 11.407 kb on - strand, within GFF1548at 11.410 kb on - strand, within GFF1548at 11.410 kb on - strand, within GFF1548at 11.439 kb on - strand, within GFF1548at 11.462 kb on + strand, within GFF1548at 11.507 kb on - strand, within GFF1548

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with ES18h1_phage 0.75 MOI
remove
8,578 - GFF1546 0.77 +0.5
8,909 + GFF1546 0.86 +0.6
9,343 + +0.0
9,402 - +1.1
9,402 - -0.9
9,476 + +1.2
9,510 + -0.2
9,775 + GFF1547 0.21 -0.1
9,776 - GFF1547 0.21 +4.3
9,803 - GFF1547 0.23 +0.4
9,850 + GFF1547 0.27 -1.0
9,961 - GFF1547 0.36 +1.0
10,106 + GFF1547 0.47 -0.7
10,255 + GFF1547 0.59 -0.0
10,255 + GFF1547 0.59 -0.9
10,588 + GFF1547 0.86 -1.0
10,682 + +0.4
10,710 - -0.3
10,743 + -0.1
10,798 - +0.9
10,798 - +2.6
10,930 - GFF1548 0.15 +0.2
11,038 + GFF1548 0.26 -1.2
11,040 + GFF1548 0.26 +0.8
11,040 + GFF1548 0.26 -0.0
11,040 + GFF1548 0.26 +0.3
11,040 + GFF1548 0.26 -0.2
11,040 + GFF1548 0.26 +0.6
11,040 + GFF1548 0.26 +0.7
11,041 - GFF1548 0.26 +0.4
11,041 - GFF1548 0.26 +0.8
11,042 + GFF1548 0.26 -1.2
11,042 + GFF1548 0.26 +2.5
11,042 + GFF1548 0.26 +1.6
11,042 + GFF1548 0.26 -0.7
11,042 + GFF1548 0.26 -1.7
11,145 - GFF1548 0.38 +0.4
11,175 + GFF1548 0.41 -1.1
11,176 - GFF1548 0.41 -0.8
11,176 - GFF1548 0.41 -0.2
11,176 - GFF1548 0.41 +0.6
11,285 + GFF1548 0.52 -0.4
11,286 - GFF1548 0.53 -1.5
11,352 + GFF1548 0.60 -0.3
11,402 + GFF1548 0.65 -0.6
11,402 + GFF1548 0.65 +0.2
11,403 - GFF1548 0.65 -0.2
11,406 + GFF1548 0.65 +0.9
11,407 - GFF1548 0.65 -0.4
11,410 - GFF1548 0.66 +0.5
11,410 - GFF1548 0.66 +0.3
11,439 - GFF1548 0.69 +1.4
11,462 + GFF1548 0.71 +0.3
11,507 - GFF1548 0.76 +0.6

Or see this region's nucleotide sequence