Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1340

Experiment: LB_plus_SM_buffer with ES18h1_phage 0.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1338 and GFF1339 overlap by 4 nucleotidesGFF1339 and GFF1340 are separated by 40 nucleotidesGFF1340 and GFF1341 are separated by 119 nucleotides GFF1338 - Putative outer membrane protein, at 45,462 to 46,538 GFF1338 GFF1339 - Probable fimbrial chaperone protein, at 46,535 to 47,278 GFF1339 GFF1340 - FIG036507: Fimbriae usher protein StdB, at 47,319 to 49,808 GFF1340 GFF1341 - Putative fimbrial-like protein, at 49,928 to 50,512 GFF1341 Position (kb) 47 48 49 50Strain fitness (log2 ratio) -2 -1 0 1 2 3at 46.439 kb on + strandat 46.439 kb on + strandat 46.443 kb on + strandat 46.443 kb on + strandat 46.621 kb on + strand, within GFF1339at 46.621 kb on + strand, within GFF1339at 46.622 kb on - strand, within GFF1339at 46.622 kb on - strand, within GFF1339at 46.623 kb on + strand, within GFF1339at 46.668 kb on - strand, within GFF1339at 46.668 kb on - strand, within GFF1339at 46.730 kb on - strand, within GFF1339at 46.761 kb on + strand, within GFF1339at 46.764 kb on + strand, within GFF1339at 46.850 kb on - strand, within GFF1339at 46.867 kb on - strand, within GFF1339at 46.867 kb on - strand, within GFF1339at 46.981 kb on + strand, within GFF1339at 46.981 kb on + strand, within GFF1339at 46.981 kb on + strand, within GFF1339at 46.982 kb on - strand, within GFF1339at 46.982 kb on - strand, within GFF1339at 47.038 kb on + strand, within GFF1339at 47.179 kb on + strand, within GFF1339at 47.180 kb on - strand, within GFF1339at 47.314 kb on + strandat 47.321 kb on - strandat 47.681 kb on + strand, within GFF1340at 47.681 kb on + strand, within GFF1340at 47.787 kb on + strand, within GFF1340at 47.787 kb on + strand, within GFF1340at 47.788 kb on - strand, within GFF1340at 47.788 kb on - strand, within GFF1340at 47.788 kb on - strand, within GFF1340at 48.088 kb on + strand, within GFF1340at 48.088 kb on + strand, within GFF1340at 48.089 kb on - strand, within GFF1340at 48.089 kb on - strand, within GFF1340at 48.120 kb on - strand, within GFF1340at 48.163 kb on + strand, within GFF1340at 48.244 kb on + strand, within GFF1340at 48.245 kb on - strand, within GFF1340at 48.245 kb on - strand, within GFF1340at 48.245 kb on - strand, within GFF1340at 48.248 kb on + strand, within GFF1340at 48.332 kb on - strand, within GFF1340at 48.332 kb on - strand, within GFF1340at 48.398 kb on - strand, within GFF1340at 48.468 kb on - strand, within GFF1340at 48.485 kb on - strand, within GFF1340at 48.485 kb on - strand, within GFF1340at 48.496 kb on + strand, within GFF1340at 48.582 kb on - strand, within GFF1340at 48.659 kb on + strand, within GFF1340at 48.659 kb on + strand, within GFF1340at 48.782 kb on + strand, within GFF1340at 48.866 kb on + strand, within GFF1340at 48.959 kb on + strand, within GFF1340at 48.960 kb on - strand, within GFF1340at 48.992 kb on - strand, within GFF1340at 49.067 kb on + strand, within GFF1340at 49.081 kb on + strand, within GFF1340at 49.082 kb on - strand, within GFF1340at 49.082 kb on - strand, within GFF1340at 49.135 kb on + strand, within GFF1340at 49.136 kb on - strand, within GFF1340at 49.136 kb on - strand, within GFF1340at 49.136 kb on - strand, within GFF1340at 49.259 kb on - strand, within GFF1340at 49.291 kb on + strand, within GFF1340at 49.650 kb on - strandat 49.651 kb on + strandat 49.652 kb on - strandat 49.652 kb on - strandat 49.704 kb on - strandat 49.868 kb on + strandat 49.869 kb on - strandat 49.947 kb on + strandat 49.948 kb on - strandat 49.948 kb on - strandat 50.080 kb on + strand, within GFF1341at 50.080 kb on + strand, within GFF1341at 50.148 kb on + strand, within GFF1341at 50.165 kb on - strand, within GFF1341at 50.193 kb on - strand, within GFF1341at 50.228 kb on - strand, within GFF1341at 50.303 kb on - strand, within GFF1341at 50.466 kb on + strandat 50.466 kb on + strandat 50.467 kb on - strandat 50.467 kb on - strandat 50.517 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with ES18h1_phage 0.75 MOI
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46,439 + +2.1
46,439 + -0.9
46,443 + +0.2
46,443 + -0.1
46,621 + GFF1339 0.12 +3.3
46,621 + GFF1339 0.12 -0.2
46,622 - GFF1339 0.12 +0.0
46,622 - GFF1339 0.12 +0.4
46,623 + GFF1339 0.12 -0.5
46,668 - GFF1339 0.18 -0.5
46,668 - GFF1339 0.18 +0.3
46,730 - GFF1339 0.26 +0.6
46,761 + GFF1339 0.30 +0.9
46,764 + GFF1339 0.31 -0.3
46,850 - GFF1339 0.42 -0.5
46,867 - GFF1339 0.45 +0.8
46,867 - GFF1339 0.45 -0.8
46,981 + GFF1339 0.60 +0.9
46,981 + GFF1339 0.60 -0.1
46,981 + GFF1339 0.60 -0.3
46,982 - GFF1339 0.60 -2.2
46,982 - GFF1339 0.60 +0.6
47,038 + GFF1339 0.68 -0.2
47,179 + GFF1339 0.87 -1.3
47,180 - GFF1339 0.87 -1.5
47,314 + -0.2
47,321 - +0.3
47,681 + GFF1340 0.15 -0.4
47,681 + GFF1340 0.15 +1.0
47,787 + GFF1340 0.19 +0.8
47,787 + GFF1340 0.19 +0.1
47,788 - GFF1340 0.19 +0.2
47,788 - GFF1340 0.19 -1.4
47,788 - GFF1340 0.19 -0.3
48,088 + GFF1340 0.31 +0.8
48,088 + GFF1340 0.31 +0.3
48,089 - GFF1340 0.31 -0.2
48,089 - GFF1340 0.31 -0.1
48,120 - GFF1340 0.32 -0.3
48,163 + GFF1340 0.34 +0.2
48,244 + GFF1340 0.37 -0.7
48,245 - GFF1340 0.37 -0.3
48,245 - GFF1340 0.37 +2.8
48,245 - GFF1340 0.37 +2.3
48,248 + GFF1340 0.37 +1.4
48,332 - GFF1340 0.41 -0.2
48,332 - GFF1340 0.41 +2.3
48,398 - GFF1340 0.43 +1.3
48,468 - GFF1340 0.46 -0.8
48,485 - GFF1340 0.47 -0.6
48,485 - GFF1340 0.47 -0.4
48,496 + GFF1340 0.47 -0.0
48,582 - GFF1340 0.51 +0.4
48,659 + GFF1340 0.54 -0.3
48,659 + GFF1340 0.54 +0.8
48,782 + GFF1340 0.59 +0.3
48,866 + GFF1340 0.62 +0.1
48,959 + GFF1340 0.66 -0.2
48,960 - GFF1340 0.66 -0.6
48,992 - GFF1340 0.67 -0.1
49,067 + GFF1340 0.70 +0.7
49,081 + GFF1340 0.71 -0.3
49,082 - GFF1340 0.71 -0.0
49,082 - GFF1340 0.71 -0.2
49,135 + GFF1340 0.73 +1.2
49,136 - GFF1340 0.73 +3.0
49,136 - GFF1340 0.73 -0.4
49,136 - GFF1340 0.73 +1.1
49,259 - GFF1340 0.78 +0.6
49,291 + GFF1340 0.79 -1.3
49,650 - +0.0
49,651 + -0.1
49,652 - +2.9
49,652 - -0.0
49,704 - +1.0
49,868 + -0.2
49,869 - +0.5
49,947 + -0.7
49,948 - -0.2
49,948 - +0.1
50,080 + GFF1341 0.26 +0.2
50,080 + GFF1341 0.26 +0.2
50,148 + GFF1341 0.38 -0.9
50,165 - GFF1341 0.41 +1.2
50,193 - GFF1341 0.45 -0.8
50,228 - GFF1341 0.51 -1.0
50,303 - GFF1341 0.64 +0.7
50,466 + +3.5
50,466 + -0.2
50,467 - +0.5
50,467 - +0.8
50,517 - +0.3

Or see this region's nucleotide sequence