Experiment: marine_broth_2216 with Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_19080 and CA264_19085 are separated by 508 nucleotides CA264_19085 and CA264_19090 overlap by 17 nucleotides
CA264_19080: CA264_19080 - hypothetical protein, at 4,433,607 to 4,434,173
_19080
CA264_19085: CA264_19085 - RNA polymerase subunit sigma-24, at 4,434,682 to 4,435,260
_19085
CA264_19090: CA264_19090 - hypothetical protein, at 4,435,244 to 4,436,938
_19090
Position (kb)
4434
4435
4436 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4433.700 kb on + strand, within CA264_19080 at 4433.729 kb on + strand, within CA264_19080 at 4433.729 kb on + strand, within CA264_19080 at 4433.730 kb on - strand, within CA264_19080 at 4433.737 kb on + strand, within CA264_19080 at 4433.752 kb on - strand, within CA264_19080 at 4433.752 kb on - strand, within CA264_19080 at 4433.752 kb on - strand, within CA264_19080 at 4433.788 kb on + strand, within CA264_19080 at 4433.788 kb on + strand, within CA264_19080 at 4433.789 kb on - strand, within CA264_19080 at 4433.795 kb on + strand, within CA264_19080 at 4433.832 kb on + strand, within CA264_19080 at 4433.833 kb on - strand, within CA264_19080 at 4433.841 kb on + strand, within CA264_19080 at 4434.099 kb on + strand, within CA264_19080 at 4434.099 kb on + strand, within CA264_19080 at 4434.101 kb on + strand, within CA264_19080 at 4434.101 kb on + strand, within CA264_19080 at 4434.163 kb on + strand at 4434.163 kb on + strand at 4434.164 kb on - strand at 4434.169 kb on - strand at 4434.172 kb on - strand at 4434.172 kb on - strand at 4434.172 kb on - strand at 4434.175 kb on + strand at 4434.177 kb on + strand at 4434.177 kb on + strand at 4434.178 kb on - strand at 4434.178 kb on - strand at 4434.178 kb on - strand at 4434.200 kb on - strand at 4434.200 kb on - strand at 4434.210 kb on - strand at 4434.215 kb on + strand at 4434.216 kb on - strand at 4434.218 kb on + strand at 4434.218 kb on + strand at 4434.219 kb on - strand at 4434.290 kb on + strand at 4434.291 kb on - strand at 4434.293 kb on + strand at 4434.407 kb on - strand at 4434.438 kb on - strand at 4434.493 kb on + strand at 4434.605 kb on - strand at 4434.605 kb on - strand at 4434.615 kb on + strand at 4434.651 kb on + strand at 4434.726 kb on - strand at 4434.769 kb on + strand, within CA264_19085 at 4434.769 kb on + strand, within CA264_19085 at 4434.840 kb on + strand, within CA264_19085 at 4434.944 kb on + strand, within CA264_19085 at 4435.009 kb on - strand, within CA264_19085 at 4435.056 kb on - strand, within CA264_19085 at 4435.059 kb on + strand, within CA264_19085 at 4435.106 kb on - strand, within CA264_19085 at 4435.180 kb on + strand, within CA264_19085 at 4435.199 kb on + strand, within CA264_19085 at 4435.200 kb on - strand, within CA264_19085 at 4435.360 kb on + strand at 4435.361 kb on - strand at 4435.382 kb on + strand at 4435.383 kb on - strand at 4435.403 kb on + strand at 4435.464 kb on - strand, within CA264_19090 at 4435.467 kb on - strand, within CA264_19090 at 4435.720 kb on + strand, within CA264_19090 at 4435.720 kb on + strand, within CA264_19090
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM remove 4,433,700 + CA264_19080 0.16 -0.6 4,433,729 + CA264_19080 0.22 -1.1 4,433,729 + CA264_19080 0.22 -1.0 4,433,730 - CA264_19080 0.22 -2.2 4,433,737 + CA264_19080 0.23 +1.3 4,433,752 - CA264_19080 0.26 +1.0 4,433,752 - CA264_19080 0.26 +0.3 4,433,752 - CA264_19080 0.26 +0.6 4,433,788 + CA264_19080 0.32 +0.1 4,433,788 + CA264_19080 0.32 +0.1 4,433,789 - CA264_19080 0.32 +0.3 4,433,795 + CA264_19080 0.33 +0.3 4,433,832 + CA264_19080 0.40 -1.1 4,433,833 - CA264_19080 0.40 -0.1 4,433,841 + CA264_19080 0.41 -0.7 4,434,099 + CA264_19080 0.87 +1.5 4,434,099 + CA264_19080 0.87 +0.7 4,434,101 + CA264_19080 0.87 +0.7 4,434,101 + CA264_19080 0.87 -0.5 4,434,163 + -0.3 4,434,163 + -0.3 4,434,164 - +0.6 4,434,169 - -0.2 4,434,172 - +0.2 4,434,172 - +0.5 4,434,172 - -0.6 4,434,175 + -0.6 4,434,177 + -0.2 4,434,177 + -0.2 4,434,178 - -1.1 4,434,178 - +0.0 4,434,178 - +0.7 4,434,200 - -0.0 4,434,200 - +0.6 4,434,210 - +0.5 4,434,215 + -0.7 4,434,216 - +0.4 4,434,218 + +1.3 4,434,218 + +0.0 4,434,219 - +0.3 4,434,290 + +0.3 4,434,291 - -0.5 4,434,293 + +0.3 4,434,407 - +3.1 4,434,438 - -0.0 4,434,493 + -0.1 4,434,605 - -0.8 4,434,605 - -0.5 4,434,615 + -0.3 4,434,651 + +0.3 4,434,726 - -0.4 4,434,769 + CA264_19085 0.15 +0.0 4,434,769 + CA264_19085 0.15 -0.1 4,434,840 + CA264_19085 0.27 +0.8 4,434,944 + CA264_19085 0.45 +0.0 4,435,009 - CA264_19085 0.56 -0.3 4,435,056 - CA264_19085 0.65 +1.3 4,435,059 + CA264_19085 0.65 +0.2 4,435,106 - CA264_19085 0.73 -1.5 4,435,180 + CA264_19085 0.86 +0.1 4,435,199 + CA264_19085 0.89 +1.3 4,435,200 - CA264_19085 0.89 -0.4 4,435,360 + -0.9 4,435,361 - -1.3 4,435,382 + -1.1 4,435,383 - +0.3 4,435,403 + +0.7 4,435,464 - CA264_19090 0.13 +0.3 4,435,467 - CA264_19090 0.13 +1.3 4,435,720 + CA264_19090 0.28 +1.3 4,435,720 + CA264_19090 0.28 -1.1
Or see this region's nucleotide sequence