Experiment: marine_broth_2216 with Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_18160 and CA264_18165 overlap by 4 nucleotides CA264_18165 and CA264_18170 are separated by 214 nucleotides CA264_18170 and CA264_18175 overlap by 4 nucleotides
CA264_18160: CA264_18160 - hypothetical protein, at 4,223,727 to 4,224,632
_18160
CA264_18165: CA264_18165 - S1/P1 Nuclease, at 4,224,629 to 4,225,600
_18165
CA264_18170: CA264_18170 - peptide deformylase, at 4,225,815 to 4,226,384
_18170
CA264_18175: CA264_18175 - Holliday junction resolvase RuvX, at 4,226,381 to 4,226,797
_18175
Position (kb)
4224
4225
4226 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 4223.633 kb on + strand at 4223.634 kb on - strand at 4223.634 kb on - strand at 4223.727 kb on - strand at 4223.727 kb on - strand at 4223.767 kb on - strand at 4223.844 kb on + strand, within CA264_18160 at 4223.844 kb on + strand, within CA264_18160 at 4223.844 kb on + strand, within CA264_18160 at 4223.853 kb on + strand, within CA264_18160 at 4223.854 kb on - strand, within CA264_18160 at 4223.854 kb on - strand, within CA264_18160 at 4223.854 kb on - strand, within CA264_18160 at 4223.854 kb on - strand, within CA264_18160 at 4223.854 kb on - strand, within CA264_18160 at 4223.908 kb on + strand, within CA264_18160 at 4223.909 kb on - strand, within CA264_18160 at 4223.909 kb on - strand, within CA264_18160 at 4223.909 kb on - strand, within CA264_18160 at 4223.909 kb on - strand, within CA264_18160 at 4223.911 kb on - strand, within CA264_18160 at 4223.911 kb on - strand, within CA264_18160 at 4223.911 kb on - strand, within CA264_18160 at 4223.911 kb on - strand, within CA264_18160 at 4223.911 kb on - strand, within CA264_18160 at 4223.911 kb on - strand, within CA264_18160 at 4223.944 kb on - strand, within CA264_18160 at 4223.944 kb on - strand, within CA264_18160 at 4224.046 kb on - strand, within CA264_18160 at 4224.095 kb on - strand, within CA264_18160 at 4224.174 kb on - strand, within CA264_18160 at 4224.180 kb on + strand, within CA264_18160 at 4224.321 kb on + strand, within CA264_18160 at 4224.325 kb on - strand, within CA264_18160 at 4224.326 kb on + strand, within CA264_18160 at 4224.411 kb on + strand, within CA264_18160 at 4224.442 kb on + strand, within CA264_18160 at 4224.443 kb on - strand, within CA264_18160 at 4224.496 kb on - strand, within CA264_18160 at 4224.496 kb on - strand, within CA264_18160 at 4224.522 kb on + strand, within CA264_18160 at 4224.560 kb on - strand at 4224.561 kb on + strand at 4224.594 kb on - strand at 4224.775 kb on - strand, within CA264_18165 at 4224.815 kb on + strand, within CA264_18165 at 4224.828 kb on - strand, within CA264_18165 at 4224.841 kb on - strand, within CA264_18165 at 4224.901 kb on + strand, within CA264_18165 at 4224.948 kb on + strand, within CA264_18165 at 4224.949 kb on - strand, within CA264_18165 at 4225.002 kb on - strand, within CA264_18165 at 4225.021 kb on - strand, within CA264_18165 at 4225.047 kb on + strand, within CA264_18165 at 4225.094 kb on + strand, within CA264_18165 at 4225.125 kb on + strand, within CA264_18165 at 4225.125 kb on + strand, within CA264_18165 at 4225.126 kb on - strand, within CA264_18165 at 4225.126 kb on - strand, within CA264_18165 at 4225.168 kb on - strand, within CA264_18165 at 4225.275 kb on + strand, within CA264_18165 at 4225.375 kb on - strand, within CA264_18165 at 4225.439 kb on - strand, within CA264_18165 at 4225.538 kb on - strand at 4225.612 kb on - strand at 4225.631 kb on - strand at 4225.631 kb on - strand at 4225.725 kb on + strand at 4225.725 kb on + strand at 4225.791 kb on + strand at 4225.798 kb on + strand at 4225.798 kb on + strand at 4225.799 kb on - strand at 4225.799 kb on - strand at 4225.803 kb on + strand at 4225.811 kb on + strand at 4225.852 kb on + strand at 4225.853 kb on - strand at 4226.386 kb on + strand at 4226.386 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM remove 4,223,633 + -0.1 4,223,634 - -0.3 4,223,634 - -0.6 4,223,727 - -0.7 4,223,727 - -0.2 4,223,767 - -0.4 4,223,844 + CA264_18160 0.13 +1.3 4,223,844 + CA264_18160 0.13 -0.3 4,223,844 + CA264_18160 0.13 -0.0 4,223,853 + CA264_18160 0.14 +0.5 4,223,854 - CA264_18160 0.14 -0.6 4,223,854 - CA264_18160 0.14 -1.2 4,223,854 - CA264_18160 0.14 -2.6 4,223,854 - CA264_18160 0.14 -0.2 4,223,854 - CA264_18160 0.14 -0.0 4,223,908 + CA264_18160 0.20 -0.1 4,223,909 - CA264_18160 0.20 -0.5 4,223,909 - CA264_18160 0.20 +1.0 4,223,909 - CA264_18160 0.20 +0.0 4,223,909 - CA264_18160 0.20 +0.7 4,223,911 - CA264_18160 0.20 -0.6 4,223,911 - CA264_18160 0.20 +0.3 4,223,911 - CA264_18160 0.20 -1.5 4,223,911 - CA264_18160 0.20 +0.2 4,223,911 - CA264_18160 0.20 +0.9 4,223,911 - CA264_18160 0.20 -0.7 4,223,944 - CA264_18160 0.24 -0.6 4,223,944 - CA264_18160 0.24 +0.9 4,224,046 - CA264_18160 0.35 +0.1 4,224,095 - CA264_18160 0.41 +0.6 4,224,174 - CA264_18160 0.49 +0.9 4,224,180 + CA264_18160 0.50 -0.0 4,224,321 + CA264_18160 0.66 -0.6 4,224,325 - CA264_18160 0.66 -0.1 4,224,326 + CA264_18160 0.66 -0.7 4,224,411 + CA264_18160 0.75 +0.3 4,224,442 + CA264_18160 0.79 +0.1 4,224,443 - CA264_18160 0.79 -0.4 4,224,496 - CA264_18160 0.85 -0.6 4,224,496 - CA264_18160 0.85 +0.4 4,224,522 + CA264_18160 0.88 +0.3 4,224,560 - +0.6 4,224,561 + +0.3 4,224,594 - -0.8 4,224,775 - CA264_18165 0.15 -0.1 4,224,815 + CA264_18165 0.19 +0.2 4,224,828 - CA264_18165 0.20 +0.1 4,224,841 - CA264_18165 0.22 +2.9 4,224,901 + CA264_18165 0.28 +2.3 4,224,948 + CA264_18165 0.33 +0.4 4,224,949 - CA264_18165 0.33 +1.3 4,225,002 - CA264_18165 0.38 +0.5 4,225,021 - CA264_18165 0.40 -0.4 4,225,047 + CA264_18165 0.43 +0.8 4,225,094 + CA264_18165 0.48 +1.7 4,225,125 + CA264_18165 0.51 +1.3 4,225,125 + CA264_18165 0.51 +1.3 4,225,126 - CA264_18165 0.51 -0.4 4,225,126 - CA264_18165 0.51 +0.7 4,225,168 - CA264_18165 0.55 +0.1 4,225,275 + CA264_18165 0.66 -0.2 4,225,375 - CA264_18165 0.77 +1.5 4,225,439 - CA264_18165 0.83 +1.7 4,225,538 - +0.6 4,225,612 - +1.3 4,225,631 - +0.9 4,225,631 - +0.1 4,225,725 + +1.3 4,225,725 + -0.1 4,225,791 + -0.1 4,225,798 + +0.0 4,225,798 + +3.9 4,225,799 - -0.8 4,225,799 - -0.1 4,225,803 + -0.3 4,225,811 + -0.5 4,225,852 + -1.0 4,225,853 - -0.2 4,226,386 + -1.3 4,226,386 + -1.9
Or see this region's nucleotide sequence