Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14160

Experiment: marine_broth_2216 with Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14155 and CA264_14160 are separated by 407 nucleotidesCA264_14160 and CA264_14165 are separated by 67 nucleotides CA264_14155: CA264_14155 - hypothetical protein, at 3,323,143 to 3,324,399 _14155 CA264_14160: CA264_14160 - HupE / UreJ protein, at 3,324,807 to 3,325,400 _14160 CA264_14165: CA264_14165 - aminopeptidase, at 3,325,468 to 3,327,792 _14165 Position (kb) 3324 3325 3326Strain fitness (log2 ratio) -2 -1 0 1 2at 3323.867 kb on + strand, within CA264_14155at 3323.906 kb on + strand, within CA264_14155at 3323.906 kb on + strand, within CA264_14155at 3323.907 kb on - strand, within CA264_14155at 3323.907 kb on - strand, within CA264_14155at 3323.950 kb on + strand, within CA264_14155at 3323.950 kb on + strand, within CA264_14155at 3323.951 kb on - strand, within CA264_14155at 3324.011 kb on + strand, within CA264_14155at 3324.035 kb on + strand, within CA264_14155at 3324.035 kb on + strand, within CA264_14155at 3324.036 kb on - strand, within CA264_14155at 3324.036 kb on - strand, within CA264_14155at 3324.147 kb on + strand, within CA264_14155at 3324.148 kb on - strand, within CA264_14155at 3324.148 kb on - strand, within CA264_14155at 3324.171 kb on - strand, within CA264_14155at 3324.171 kb on - strand, within CA264_14155at 3324.171 kb on - strand, within CA264_14155at 3324.182 kb on + strand, within CA264_14155at 3324.183 kb on - strand, within CA264_14155at 3324.183 kb on - strand, within CA264_14155at 3324.183 kb on - strand, within CA264_14155at 3324.217 kb on + strand, within CA264_14155at 3324.253 kb on - strand, within CA264_14155at 3324.261 kb on + strand, within CA264_14155at 3324.305 kb on - strandat 3324.327 kb on + strandat 3324.363 kb on - strandat 3324.431 kb on + strandat 3324.492 kb on - strandat 3324.499 kb on + strandat 3324.499 kb on + strandat 3324.500 kb on - strandat 3324.507 kb on + strandat 3324.508 kb on - strandat 3324.509 kb on + strandat 3324.626 kb on + strandat 3324.626 kb on + strandat 3324.626 kb on + strandat 3324.627 kb on - strandat 3324.647 kb on + strandat 3324.721 kb on + strandat 3324.722 kb on - strandat 3324.774 kb on + strandat 3324.775 kb on - strandat 3324.828 kb on + strandat 3324.828 kb on + strandat 3324.975 kb on - strand, within CA264_14160at 3324.975 kb on - strand, within CA264_14160at 3325.232 kb on + strand, within CA264_14160at 3325.285 kb on + strand, within CA264_14160at 3325.393 kb on + strandat 3325.406 kb on - strandat 3325.407 kb on + strandat 3325.419 kb on - strandat 3325.425 kb on + strandat 3325.426 kb on - strandat 3325.426 kb on - strandat 3325.426 kb on - strandat 3325.434 kb on + strandat 3325.442 kb on + strandat 3325.442 kb on + strandat 3325.442 kb on + strandat 3325.443 kb on - strandat 3325.443 kb on - strandat 3325.443 kb on - strandat 3325.450 kb on + strandat 3325.585 kb on + strandat 3325.639 kb on + strandat 3325.640 kb on - strandat 3325.640 kb on - strandat 3325.640 kb on - strandat 3325.645 kb on - strandat 3325.646 kb on + strandat 3325.646 kb on + strandat 3325.647 kb on - strandat 3325.725 kb on - strand, within CA264_14165at 3325.733 kb on - strand, within CA264_14165at 3325.733 kb on - strandat 3325.815 kb on + strand, within CA264_14165at 3325.815 kb on + strand, within CA264_14165at 3325.816 kb on - strand, within CA264_14165at 3325.816 kb on - strand, within CA264_14165at 3325.817 kb on + strand, within CA264_14165at 3325.818 kb on - strand, within CA264_14165at 3325.818 kb on - strand, within CA264_14165at 3325.837 kb on + strand, within CA264_14165at 3325.838 kb on - strand, within CA264_14165at 3325.870 kb on - strand, within CA264_14165at 3325.913 kb on - strand, within CA264_14165at 3325.913 kb on - strand, within CA264_14165at 3326.068 kb on + strand, within CA264_14165at 3326.069 kb on - strand, within CA264_14165at 3326.069 kb on - strand, within CA264_14165at 3326.069 kb on - strand, within CA264_14165at 3326.111 kb on - strand, within CA264_14165at 3326.182 kb on + strand, within CA264_14165at 3326.190 kb on - strand, within CA264_14165at 3326.255 kb on + strand, within CA264_14165at 3326.256 kb on - strand, within CA264_14165at 3326.259 kb on + strand, within CA264_14165at 3326.259 kb on + strand, within CA264_14165at 3326.383 kb on + strand, within CA264_14165at 3326.383 kb on + strand, within CA264_14165at 3326.384 kb on - strand, within CA264_14165at 3326.384 kb on - strand, within CA264_14165

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM
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3,323,867 + CA264_14155 0.58 -1.7
3,323,906 + CA264_14155 0.61 -2.1
3,323,906 + CA264_14155 0.61 -0.6
3,323,907 - CA264_14155 0.61 +1.2
3,323,907 - CA264_14155 0.61 +1.1
3,323,950 + CA264_14155 0.64 +0.4
3,323,950 + CA264_14155 0.64 -0.1
3,323,951 - CA264_14155 0.64 +0.1
3,324,011 + CA264_14155 0.69 +1.0
3,324,035 + CA264_14155 0.71 +0.2
3,324,035 + CA264_14155 0.71 +1.2
3,324,036 - CA264_14155 0.71 -0.2
3,324,036 - CA264_14155 0.71 +1.2
3,324,147 + CA264_14155 0.80 +0.2
3,324,148 - CA264_14155 0.80 -1.2
3,324,148 - CA264_14155 0.80 +1.2
3,324,171 - CA264_14155 0.82 +0.0
3,324,171 - CA264_14155 0.82 +0.0
3,324,171 - CA264_14155 0.82 +0.8
3,324,182 + CA264_14155 0.83 -0.8
3,324,183 - CA264_14155 0.83 +1.7
3,324,183 - CA264_14155 0.83 -0.9
3,324,183 - CA264_14155 0.83 +1.6
3,324,217 + CA264_14155 0.85 +0.4
3,324,253 - CA264_14155 0.88 -0.4
3,324,261 + CA264_14155 0.89 -1.4
3,324,305 - -0.4
3,324,327 + -0.4
3,324,363 - +0.1
3,324,431 + +0.5
3,324,492 - -0.1
3,324,499 + -0.3
3,324,499 + +0.2
3,324,500 - -0.1
3,324,507 + -0.8
3,324,508 - +0.3
3,324,509 + +0.2
3,324,626 + -1.8
3,324,626 + -1.4
3,324,626 + -0.2
3,324,627 - +0.6
3,324,647 + +1.2
3,324,721 + -0.4
3,324,722 - +2.5
3,324,774 + +0.3
3,324,775 - +1.2
3,324,828 + +0.3
3,324,828 + -0.3
3,324,975 - CA264_14160 0.28 +0.9
3,324,975 - CA264_14160 0.28 +0.8
3,325,232 + CA264_14160 0.72 +0.3
3,325,285 + CA264_14160 0.80 +1.2
3,325,393 + +0.1
3,325,406 - -0.3
3,325,407 + -0.3
3,325,419 - +0.1
3,325,425 + -0.1
3,325,426 - +0.5
3,325,426 - -0.9
3,325,426 - -0.4
3,325,434 + +0.4
3,325,442 + +0.4
3,325,442 + -0.5
3,325,442 + +1.2
3,325,443 - -0.7
3,325,443 - -0.4
3,325,443 - -0.1
3,325,450 + +0.5
3,325,585 + +0.2
3,325,639 + -0.5
3,325,640 - -0.3
3,325,640 - +0.2
3,325,640 - -1.6
3,325,645 - +0.2
3,325,646 + -0.6
3,325,646 + +0.2
3,325,647 - +0.2
3,325,725 - CA264_14165 0.11 -0.4
3,325,733 - CA264_14165 0.11 -0.3
3,325,733 - -1.1
3,325,815 + CA264_14165 0.15 +0.3
3,325,815 + CA264_14165 0.15 -1.4
3,325,816 - CA264_14165 0.15 +0.2
3,325,816 - CA264_14165 0.15 +1.2
3,325,817 + CA264_14165 0.15 -0.7
3,325,818 - CA264_14165 0.15 +2.2
3,325,818 - CA264_14165 0.15 -0.8
3,325,837 + CA264_14165 0.16 -0.4
3,325,838 - CA264_14165 0.16 -0.7
3,325,870 - CA264_14165 0.17 -0.7
3,325,913 - CA264_14165 0.19 -1.1
3,325,913 - CA264_14165 0.19 +0.1
3,326,068 + CA264_14165 0.26 -0.3
3,326,069 - CA264_14165 0.26 +1.8
3,326,069 - CA264_14165 0.26 -0.2
3,326,069 - CA264_14165 0.26 -0.0
3,326,111 - CA264_14165 0.28 -0.4
3,326,182 + CA264_14165 0.31 -0.8
3,326,190 - CA264_14165 0.31 +0.4
3,326,255 + CA264_14165 0.34 +0.2
3,326,256 - CA264_14165 0.34 -0.3
3,326,259 + CA264_14165 0.34 -0.5
3,326,259 + CA264_14165 0.34 +0.9
3,326,383 + CA264_14165 0.39 -1.0
3,326,383 + CA264_14165 0.39 +1.8
3,326,384 - CA264_14165 0.39 +1.2
3,326,384 - CA264_14165 0.39 -0.0

Or see this region's nucleotide sequence