Experiment: marine_broth_2216 with Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_14105 and CA264_14110 are separated by 1 nucleotides CA264_14110 and CA264_14115 are separated by 161 nucleotides CA264_14115 and CA264_14120 are separated by 132 nucleotides
CA264_14105: CA264_14105 - T9SS C-terminal target domain-containing protein, at 3,313,128 to 3,314,486
_14105
CA264_14110: CA264_14110 - phosphoribosyltransferase, at 3,314,488 to 3,315,114
_14110
CA264_14115: CA264_14115 - hydrolase, at 3,315,276 to 3,315,962
_14115
CA264_14120: CA264_14120 - hypothetical protein, at 3,316,095 to 3,316,766
_14120
Position (kb)
3314
3315
3316 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3313.538 kb on + strand, within CA264_14105 at 3313.545 kb on - strand, within CA264_14105 at 3313.553 kb on + strand, within CA264_14105 at 3313.554 kb on - strand, within CA264_14105 at 3313.585 kb on - strand, within CA264_14105 at 3313.597 kb on + strand, within CA264_14105 at 3313.598 kb on - strand, within CA264_14105 at 3313.618 kb on + strand, within CA264_14105 at 3313.618 kb on + strand, within CA264_14105 at 3313.628 kb on - strand, within CA264_14105 at 3313.670 kb on - strand, within CA264_14105 at 3313.680 kb on + strand, within CA264_14105 at 3313.693 kb on + strand, within CA264_14105 at 3313.694 kb on - strand, within CA264_14105 at 3313.759 kb on + strand, within CA264_14105 at 3313.759 kb on + strand, within CA264_14105 at 3313.759 kb on + strand, within CA264_14105 at 3313.759 kb on + strand, within CA264_14105 at 3313.759 kb on + strand, within CA264_14105 at 3313.759 kb on + strand, within CA264_14105 at 3313.760 kb on - strand, within CA264_14105 at 3313.783 kb on + strand, within CA264_14105 at 3313.784 kb on - strand, within CA264_14105 at 3313.789 kb on + strand, within CA264_14105 at 3313.851 kb on - strand, within CA264_14105 at 3313.898 kb on - strand, within CA264_14105 at 3313.898 kb on - strand, within CA264_14105 at 3313.910 kb on + strand, within CA264_14105 at 3313.910 kb on + strand, within CA264_14105 at 3313.910 kb on + strand, within CA264_14105 at 3314.010 kb on + strand, within CA264_14105 at 3314.065 kb on + strand, within CA264_14105 at 3314.101 kb on - strand, within CA264_14105 at 3314.142 kb on + strand, within CA264_14105 at 3314.143 kb on - strand, within CA264_14105 at 3314.149 kb on + strand, within CA264_14105 at 3314.201 kb on - strand, within CA264_14105 at 3314.201 kb on - strand, within CA264_14105 at 3314.471 kb on + strand at 3314.512 kb on + strand at 3314.529 kb on - strand at 3314.701 kb on + strand, within CA264_14110 at 3314.829 kb on + strand, within CA264_14110 at 3314.853 kb on - strand, within CA264_14110 at 3314.958 kb on + strand, within CA264_14110 at 3314.959 kb on - strand, within CA264_14110 at 3315.133 kb on + strand at 3315.202 kb on - strand at 3315.419 kb on + strand, within CA264_14115 at 3315.420 kb on - strand, within CA264_14115 at 3315.520 kb on - strand, within CA264_14115 at 3315.520 kb on - strand, within CA264_14115 at 3315.601 kb on - strand, within CA264_14115 at 3315.601 kb on - strand, within CA264_14115 at 3315.679 kb on + strand, within CA264_14115 at 3315.679 kb on + strand, within CA264_14115 at 3315.680 kb on - strand, within CA264_14115 at 3315.683 kb on + strand, within CA264_14115 at 3315.684 kb on - strand, within CA264_14115 at 3315.715 kb on - strand, within CA264_14115 at 3315.828 kb on - strand, within CA264_14115 at 3315.950 kb on + strand at 3315.952 kb on + strand at 3315.953 kb on - strand at 3315.953 kb on - strand at 3315.953 kb on - strand at 3315.962 kb on + strand at 3315.963 kb on - strand at 3316.005 kb on + strand at 3316.006 kb on - strand at 3316.013 kb on - strand at 3316.024 kb on + strand at 3316.043 kb on - strand at 3316.069 kb on - strand at 3316.090 kb on + strand at 3316.090 kb on + strand at 3316.090 kb on + strand at 3316.091 kb on - strand at 3316.091 kb on - strand at 3316.094 kb on + strand at 3316.094 kb on + strand at 3316.095 kb on - strand at 3316.095 kb on - strand at 3316.095 kb on - strand at 3316.105 kb on + strand at 3316.105 kb on + strand at 3316.106 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM remove 3,313,538 + CA264_14105 0.30 +1.6 3,313,545 - CA264_14105 0.31 -0.5 3,313,553 + CA264_14105 0.31 -2.7 3,313,554 - CA264_14105 0.31 -1.0 3,313,585 - CA264_14105 0.34 -0.4 3,313,597 + CA264_14105 0.35 +0.2 3,313,598 - CA264_14105 0.35 -1.1 3,313,618 + CA264_14105 0.36 +0.1 3,313,618 + CA264_14105 0.36 -0.7 3,313,628 - CA264_14105 0.37 +1.7 3,313,670 - CA264_14105 0.40 +0.9 3,313,680 + CA264_14105 0.41 +0.0 3,313,693 + CA264_14105 0.42 +1.2 3,313,694 - CA264_14105 0.42 +0.4 3,313,759 + CA264_14105 0.46 +0.8 3,313,759 + CA264_14105 0.46 +0.4 3,313,759 + CA264_14105 0.46 +0.0 3,313,759 + CA264_14105 0.46 +1.7 3,313,759 + CA264_14105 0.46 +0.2 3,313,759 + CA264_14105 0.46 +2.0 3,313,760 - CA264_14105 0.47 +0.0 3,313,783 + CA264_14105 0.48 +1.2 3,313,784 - CA264_14105 0.48 +0.1 3,313,789 + CA264_14105 0.49 +1.2 3,313,851 - CA264_14105 0.53 -0.4 3,313,898 - CA264_14105 0.57 +1.1 3,313,898 - CA264_14105 0.57 -1.0 3,313,910 + CA264_14105 0.58 +0.4 3,313,910 + CA264_14105 0.58 +0.4 3,313,910 + CA264_14105 0.58 -0.3 3,314,010 + CA264_14105 0.65 -0.1 3,314,065 + CA264_14105 0.69 +0.7 3,314,101 - CA264_14105 0.72 +0.2 3,314,142 + CA264_14105 0.75 +0.8 3,314,143 - CA264_14105 0.75 -0.8 3,314,149 + CA264_14105 0.75 +0.4 3,314,201 - CA264_14105 0.79 +0.2 3,314,201 - CA264_14105 0.79 -0.0 3,314,471 + +0.1 3,314,512 + -0.7 3,314,529 - -0.6 3,314,701 + CA264_14110 0.34 +0.6 3,314,829 + CA264_14110 0.54 -0.1 3,314,853 - CA264_14110 0.58 +0.4 3,314,958 + CA264_14110 0.75 +0.3 3,314,959 - CA264_14110 0.75 +0.8 3,315,133 + -1.9 3,315,202 - +0.8 3,315,419 + CA264_14115 0.21 +0.4 3,315,420 - CA264_14115 0.21 +0.0 3,315,520 - CA264_14115 0.36 +0.6 3,315,520 - CA264_14115 0.36 +1.9 3,315,601 - CA264_14115 0.47 +0.2 3,315,601 - CA264_14115 0.47 -0.8 3,315,679 + CA264_14115 0.59 -1.6 3,315,679 + CA264_14115 0.59 +0.7 3,315,680 - CA264_14115 0.59 -0.4 3,315,683 + CA264_14115 0.59 -0.3 3,315,684 - CA264_14115 0.59 -0.0 3,315,715 - CA264_14115 0.64 +1.8 3,315,828 - CA264_14115 0.80 +0.8 3,315,950 + +0.4 3,315,952 + -0.5 3,315,953 - +0.1 3,315,953 - +0.6 3,315,953 - +0.7 3,315,962 + -0.8 3,315,963 - -0.6 3,316,005 + +0.8 3,316,006 - +0.2 3,316,013 - -1.0 3,316,024 + +0.0 3,316,043 - -0.6 3,316,069 - -1.2 3,316,090 + -0.8 3,316,090 + -0.4 3,316,090 + +0.0 3,316,091 - -1.8 3,316,091 - +0.9 3,316,094 + -0.4 3,316,094 + +0.6 3,316,095 - +0.1 3,316,095 - -0.1 3,316,095 - -0.3 3,316,105 + -1.0 3,316,105 + +0.3 3,316,106 - -0.4
Or see this region's nucleotide sequence