Experiment: marine_broth_2216 with Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_14050 and CA264_14055 are separated by 294 nucleotides CA264_14055 and CA264_14060 overlap by 11 nucleotides
CA264_14050: CA264_14050 - hypothetical protein, at 3,291,033 to 3,293,399
_14050
CA264_14055: CA264_14055 - sigma-54-dependent Fis family transcriptional regulator, at 3,293,694 to 3,295,061
_14055
CA264_14060: CA264_14060 - ATP-binding protein, at 3,295,051 to 3,296,409
_14060
Position (kb)
3293
3294
3295
3296 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3292.744 kb on + strand, within CA264_14050 at 3292.744 kb on + strand at 3292.810 kb on + strand, within CA264_14050 at 3292.811 kb on - strand, within CA264_14050 at 3292.811 kb on - strand, within CA264_14050 at 3292.861 kb on - strand, within CA264_14050 at 3292.866 kb on - strand, within CA264_14050 at 3292.867 kb on + strand, within CA264_14050 at 3292.868 kb on - strand, within CA264_14050 at 3292.868 kb on - strand, within CA264_14050 at 3292.889 kb on + strand, within CA264_14050 at 3292.923 kb on - strand, within CA264_14050 at 3292.923 kb on - strand, within CA264_14050 at 3293.042 kb on - strand, within CA264_14050 at 3293.083 kb on - strand, within CA264_14050 at 3293.083 kb on - strand, within CA264_14050 at 3293.182 kb on - strand at 3293.204 kb on - strand at 3293.260 kb on + strand at 3293.291 kb on + strand at 3293.296 kb on - strand at 3293.296 kb on - strand at 3293.296 kb on - strand at 3293.297 kb on + strand at 3293.297 kb on + strand at 3293.297 kb on + strand at 3293.297 kb on + strand at 3293.297 kb on + strand at 3293.301 kb on - strand at 3293.395 kb on - strand at 3293.395 kb on - strand at 3293.399 kb on + strand at 3293.399 kb on + strand at 3293.399 kb on + strand at 3293.400 kb on - strand at 3293.405 kb on + strand at 3293.443 kb on + strand at 3293.446 kb on - strand at 3293.704 kb on + strand at 3293.705 kb on - strand at 3293.858 kb on - strand, within CA264_14055 at 3293.874 kb on - strand, within CA264_14055 at 3293.951 kb on + strand, within CA264_14055 at 3293.952 kb on - strand, within CA264_14055 at 3293.953 kb on + strand, within CA264_14055 at 3293.953 kb on + strand, within CA264_14055 at 3294.044 kb on + strand, within CA264_14055 at 3294.044 kb on + strand, within CA264_14055 at 3294.045 kb on - strand, within CA264_14055 at 3294.045 kb on - strand, within CA264_14055 at 3294.077 kb on + strand, within CA264_14055 at 3294.098 kb on + strand, within CA264_14055 at 3294.136 kb on + strand, within CA264_14055 at 3294.136 kb on + strand, within CA264_14055 at 3294.137 kb on - strand, within CA264_14055 at 3294.137 kb on - strand, within CA264_14055 at 3294.214 kb on + strand, within CA264_14055 at 3294.214 kb on + strand, within CA264_14055 at 3294.214 kb on + strand, within CA264_14055 at 3294.215 kb on - strand, within CA264_14055 at 3294.215 kb on - strand, within CA264_14055 at 3294.302 kb on - strand, within CA264_14055 at 3294.328 kb on + strand, within CA264_14055 at 3294.368 kb on + strand, within CA264_14055 at 3294.566 kb on + strand, within CA264_14055 at 3294.566 kb on + strand, within CA264_14055 at 3294.566 kb on + strand, within CA264_14055 at 3294.608 kb on + strand, within CA264_14055 at 3294.613 kb on - strand, within CA264_14055 at 3294.702 kb on + strand, within CA264_14055 at 3294.702 kb on + strand, within CA264_14055 at 3294.823 kb on + strand, within CA264_14055 at 3294.823 kb on + strand, within CA264_14055 at 3294.824 kb on - strand, within CA264_14055 at 3294.839 kb on + strand, within CA264_14055 at 3295.055 kb on + strand at 3295.056 kb on - strand at 3295.056 kb on - strand at 3295.060 kb on - strand at 3295.060 kb on - strand at 3295.060 kb on - strand at 3295.060 kb on - strand at 3295.060 kb on - strand at 3295.127 kb on - strand at 3295.129 kb on + strand at 3295.129 kb on + strand at 3295.177 kb on - strand at 3295.207 kb on + strand, within CA264_14060 at 3295.207 kb on + strand, within CA264_14060 at 3295.208 kb on - strand, within CA264_14060 at 3295.321 kb on + strand, within CA264_14060 at 3295.322 kb on - strand, within CA264_14060 at 3295.322 kb on - strand, within CA264_14060 at 3295.345 kb on - strand, within CA264_14060 at 3295.345 kb on - strand, within CA264_14060 at 3295.348 kb on + strand, within CA264_14060 at 3295.349 kb on - strand, within CA264_14060 at 3295.349 kb on - strand, within CA264_14060 at 3295.349 kb on - strand, within CA264_14060 at 3295.364 kb on + strand, within CA264_14060 at 3295.365 kb on - strand, within CA264_14060 at 3295.365 kb on - strand, within CA264_14060 at 3295.388 kb on - strand, within CA264_14060 at 3295.593 kb on - strand, within CA264_14060 at 3295.620 kb on - strand, within CA264_14060 at 3295.620 kb on - strand, within CA264_14060 at 3295.685 kb on + strand, within CA264_14060 at 3295.984 kb on + strand, within CA264_14060 at 3296.002 kb on - strand, within CA264_14060 at 3296.008 kb on - strand, within CA264_14060
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM remove 3,292,744 + CA264_14050 0.72 -0.6 3,292,744 + -2.2 3,292,810 + CA264_14050 0.75 +1.2 3,292,811 - CA264_14050 0.75 +0.1 3,292,811 - CA264_14050 0.75 +1.3 3,292,861 - CA264_14050 0.77 -0.0 3,292,866 - CA264_14050 0.77 +1.6 3,292,867 + CA264_14050 0.77 +0.8 3,292,868 - CA264_14050 0.78 +0.2 3,292,868 - CA264_14050 0.78 +0.6 3,292,889 + CA264_14050 0.78 +0.8 3,292,923 - CA264_14050 0.80 +0.0 3,292,923 - CA264_14050 0.80 -0.1 3,293,042 - CA264_14050 0.85 -1.3 3,293,083 - CA264_14050 0.87 -0.0 3,293,083 - CA264_14050 0.87 -0.4 3,293,182 - -0.8 3,293,204 - -1.0 3,293,260 + -0.5 3,293,291 + +0.6 3,293,296 - +0.6 3,293,296 - -1.2 3,293,296 - -1.2 3,293,297 + -0.6 3,293,297 + +0.0 3,293,297 + +0.2 3,293,297 + -0.6 3,293,297 + -0.3 3,293,301 - -0.4 3,293,395 - -0.4 3,293,395 - +0.3 3,293,399 + +0.7 3,293,399 + +1.5 3,293,399 + -0.2 3,293,400 - +1.2 3,293,405 + -0.1 3,293,443 + -0.5 3,293,446 - +0.2 3,293,704 + -0.2 3,293,705 - +0.5 3,293,858 - CA264_14055 0.12 -0.1 3,293,874 - CA264_14055 0.13 -0.4 3,293,951 + CA264_14055 0.19 -0.4 3,293,952 - CA264_14055 0.19 +2.8 3,293,953 + CA264_14055 0.19 +0.1 3,293,953 + CA264_14055 0.19 -0.1 3,294,044 + CA264_14055 0.26 +0.2 3,294,044 + CA264_14055 0.26 -0.1 3,294,045 - CA264_14055 0.26 -0.8 3,294,045 - CA264_14055 0.26 -1.6 3,294,077 + CA264_14055 0.28 +1.4 3,294,098 + CA264_14055 0.30 -0.4 3,294,136 + CA264_14055 0.32 -0.7 3,294,136 + CA264_14055 0.32 +0.1 3,294,137 - CA264_14055 0.32 +2.5 3,294,137 - CA264_14055 0.32 -0.6 3,294,214 + CA264_14055 0.38 +0.3 3,294,214 + CA264_14055 0.38 -0.3 3,294,214 + CA264_14055 0.38 +0.6 3,294,215 - CA264_14055 0.38 -0.2 3,294,215 - CA264_14055 0.38 +0.6 3,294,302 - CA264_14055 0.44 -0.7 3,294,328 + CA264_14055 0.46 -0.3 3,294,368 + CA264_14055 0.49 +0.6 3,294,566 + CA264_14055 0.64 -0.4 3,294,566 + CA264_14055 0.64 -0.1 3,294,566 + CA264_14055 0.64 +0.2 3,294,608 + CA264_14055 0.67 -0.8 3,294,613 - CA264_14055 0.67 +0.7 3,294,702 + CA264_14055 0.74 +1.5 3,294,702 + CA264_14055 0.74 +0.2 3,294,823 + CA264_14055 0.83 +0.7 3,294,823 + CA264_14055 0.83 -0.2 3,294,824 - CA264_14055 0.83 -0.7 3,294,839 + CA264_14055 0.84 -0.1 3,295,055 + -0.3 3,295,056 - -0.9 3,295,056 - -0.0 3,295,060 - +0.6 3,295,060 - -0.1 3,295,060 - +0.2 3,295,060 - +1.9 3,295,060 - -1.0 3,295,127 - -1.4 3,295,129 + -0.6 3,295,129 + +1.2 3,295,177 - +0.4 3,295,207 + CA264_14060 0.11 +0.2 3,295,207 + CA264_14060 0.11 +0.6 3,295,208 - CA264_14060 0.12 -1.4 3,295,321 + CA264_14060 0.20 -0.2 3,295,322 - CA264_14060 0.20 +0.5 3,295,322 - CA264_14060 0.20 -0.5 3,295,345 - CA264_14060 0.22 +1.2 3,295,345 - CA264_14060 0.22 -0.2 3,295,348 + CA264_14060 0.22 -0.8 3,295,349 - CA264_14060 0.22 +0.9 3,295,349 - CA264_14060 0.22 -0.9 3,295,349 - CA264_14060 0.22 +0.0 3,295,364 + CA264_14060 0.23 -0.3 3,295,365 - CA264_14060 0.23 +0.9 3,295,365 - CA264_14060 0.23 +0.9 3,295,388 - CA264_14060 0.25 -0.8 3,295,593 - CA264_14060 0.40 -0.8 3,295,620 - CA264_14060 0.42 +0.0 3,295,620 - CA264_14060 0.42 +0.2 3,295,685 + CA264_14060 0.47 -0.8 3,295,984 + CA264_14060 0.69 -0.4 3,296,002 - CA264_14060 0.70 -0.2 3,296,008 - CA264_14060 0.70 -0.8
Or see this region's nucleotide sequence