Experiment: marine_broth_2216 with Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_13475 and CA264_13480 are separated by 151 nucleotides CA264_13480 and CA264_13485 are separated by 377 nucleotides
CA264_13475: CA264_13475 - serine acetyltransferase, at 3,147,208 to 3,148,041
_13475
CA264_13480: CA264_13480 - hypothetical protein, at 3,148,193 to 3,148,840
_13480
CA264_13485: CA264_13485 - hypothetical protein, at 3,149,218 to 3,150,390
_13485
Position (kb)
3148
3149 Strain fitness (log2 ratio)
-1
0
1
2 at 3148.058 kb on + strand at 3148.078 kb on + strand at 3148.108 kb on - strand at 3148.113 kb on - strand at 3148.133 kb on + strand at 3148.133 kb on + strand at 3148.134 kb on - strand at 3148.175 kb on + strand at 3148.184 kb on - strand at 3148.465 kb on + strand, within CA264_13480 at 3148.465 kb on + strand, within CA264_13480 at 3148.564 kb on + strand, within CA264_13480 at 3148.630 kb on - strand, within CA264_13480 at 3148.687 kb on - strand, within CA264_13480 at 3148.852 kb on + strand at 3148.853 kb on - strand at 3148.910 kb on + strand at 3148.939 kb on + strand at 3148.955 kb on - strand at 3148.956 kb on + strand at 3148.956 kb on + strand at 3148.957 kb on - strand at 3148.979 kb on - strand at 3149.002 kb on + strand at 3149.003 kb on - strand at 3149.008 kb on + strand at 3149.009 kb on - strand at 3149.010 kb on + strand at 3149.011 kb on - strand at 3149.011 kb on - strand at 3149.019 kb on + strand at 3149.035 kb on + strand at 3149.124 kb on - strand at 3149.177 kb on + strand at 3149.178 kb on - strand at 3149.253 kb on + strand at 3149.254 kb on - strand at 3149.255 kb on + strand at 3149.333 kb on + strand at 3149.341 kb on - strand, within CA264_13485 at 3149.404 kb on + strand, within CA264_13485 at 3149.405 kb on - strand, within CA264_13485 at 3149.405 kb on - strand, within CA264_13485 at 3149.405 kb on - strand, within CA264_13485 at 3149.427 kb on - strand, within CA264_13485 at 3149.427 kb on - strand, within CA264_13485 at 3149.522 kb on + strand, within CA264_13485 at 3149.543 kb on + strand, within CA264_13485 at 3149.543 kb on + strand, within CA264_13485 at 3149.560 kb on - strand, within CA264_13485 at 3149.560 kb on - strand, within CA264_13485 at 3149.815 kb on + strand, within CA264_13485 at 3149.819 kb on + strand, within CA264_13485
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM remove 3,148,058 + -0.9 3,148,078 + +0.3 3,148,108 - +1.7 3,148,113 - -0.9 3,148,133 + -0.2 3,148,133 + +0.3 3,148,134 - -0.8 3,148,175 + -0.4 3,148,184 - -0.4 3,148,465 + CA264_13480 0.42 -0.0 3,148,465 + CA264_13480 0.42 +1.9 3,148,564 + CA264_13480 0.57 -1.6 3,148,630 - CA264_13480 0.67 +0.0 3,148,687 - CA264_13480 0.76 -0.0 3,148,852 + -1.2 3,148,853 - -0.6 3,148,910 + +1.0 3,148,939 + -0.8 3,148,955 - -0.3 3,148,956 + -0.3 3,148,956 + +0.5 3,148,957 - +1.4 3,148,979 - -0.0 3,149,002 + -0.4 3,149,003 - +1.1 3,149,008 + -0.3 3,149,009 - -1.2 3,149,010 + -0.3 3,149,011 - -0.1 3,149,011 - +0.6 3,149,019 + -0.5 3,149,035 + -0.4 3,149,124 - -0.2 3,149,177 + -0.7 3,149,178 - -0.2 3,149,253 + -0.2 3,149,254 - +0.1 3,149,255 + +0.4 3,149,333 + +1.7 3,149,341 - CA264_13485 0.10 +0.0 3,149,404 + CA264_13485 0.16 -0.2 3,149,405 - CA264_13485 0.16 -0.7 3,149,405 - CA264_13485 0.16 +0.7 3,149,405 - CA264_13485 0.16 +0.9 3,149,427 - CA264_13485 0.18 +1.6 3,149,427 - CA264_13485 0.18 -1.3 3,149,522 + CA264_13485 0.26 -0.4 3,149,543 + CA264_13485 0.28 +1.3 3,149,543 + CA264_13485 0.28 +0.6 3,149,560 - CA264_13485 0.29 +0.1 3,149,560 - CA264_13485 0.29 +1.1 3,149,815 + CA264_13485 0.51 -0.9 3,149,819 + CA264_13485 0.51 +0.9
Or see this region's nucleotide sequence