Experiment: marine_broth_2216 with Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_13055 and CA264_13060 are separated by 388 nucleotides CA264_13060 and CA264_13065 are separated by 117 nucleotides
CA264_13055: CA264_13055 - alpha-glucosidase, at 3,043,315 to 3,045,450
_13055
CA264_13060: CA264_13060 - tRNA-Ser, at 3,045,839 to 3,045,926
_13060
CA264_13065: CA264_13065 - DUF4153 domain-containing protein, at 3,046,044 to 3,047,912
_13065
Position (kb)
3045
3046 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3044.906 kb on - strand, within CA264_13055 at 3044.920 kb on - strand, within CA264_13055 at 3044.920 kb on - strand, within CA264_13055 at 3044.925 kb on + strand, within CA264_13055 at 3044.925 kb on + strand, within CA264_13055 at 3044.926 kb on - strand, within CA264_13055 at 3044.936 kb on + strand, within CA264_13055 at 3044.937 kb on - strand, within CA264_13055 at 3044.937 kb on - strand, within CA264_13055 at 3044.951 kb on + strand, within CA264_13055 at 3044.995 kb on - strand, within CA264_13055 at 3045.152 kb on + strand, within CA264_13055 at 3045.277 kb on + strand at 3045.309 kb on + strand at 3045.310 kb on - strand at 3045.312 kb on - strand at 3045.316 kb on + strand at 3045.316 kb on + strand at 3045.316 kb on + strand at 3045.317 kb on - strand at 3045.317 kb on - strand at 3045.351 kb on + strand at 3045.412 kb on - strand at 3045.479 kb on - strand at 3045.502 kb on - strand at 3045.502 kb on - strand at 3045.502 kb on - strand at 3045.504 kb on - strand at 3045.504 kb on - strand at 3045.543 kb on - strand at 3045.588 kb on - strand at 3045.641 kb on - strand at 3045.681 kb on + strand at 3045.681 kb on + strand at 3045.689 kb on + strand at 3045.828 kb on + strand at 3045.999 kb on + strand at 3046.000 kb on - strand at 3046.108 kb on + strand at 3046.131 kb on + strand at 3046.186 kb on - strand at 3046.186 kb on - strand at 3046.243 kb on - strand, within CA264_13065 at 3046.267 kb on + strand, within CA264_13065 at 3046.274 kb on + strand, within CA264_13065 at 3046.322 kb on + strand, within CA264_13065 at 3046.322 kb on + strand, within CA264_13065 at 3046.323 kb on - strand, within CA264_13065 at 3046.323 kb on - strand, within CA264_13065 at 3046.323 kb on - strand, within CA264_13065 at 3046.323 kb on - strand, within CA264_13065 at 3046.325 kb on - strand, within CA264_13065 at 3046.325 kb on - strand, within CA264_13065 at 3046.350 kb on + strand, within CA264_13065 at 3046.350 kb on + strand, within CA264_13065 at 3046.351 kb on - strand, within CA264_13065 at 3046.351 kb on - strand, within CA264_13065 at 3046.444 kb on + strand, within CA264_13065 at 3046.445 kb on - strand, within CA264_13065 at 3046.445 kb on - strand, within CA264_13065 at 3046.492 kb on - strand, within CA264_13065 at 3046.563 kb on + strand, within CA264_13065 at 3046.563 kb on + strand, within CA264_13065 at 3046.563 kb on + strand, within CA264_13065 at 3046.563 kb on + strand, within CA264_13065 at 3046.563 kb on + strand, within CA264_13065 at 3046.563 kb on + strand, within CA264_13065 at 3046.563 kb on + strand, within CA264_13065 at 3046.564 kb on - strand, within CA264_13065 at 3046.564 kb on - strand, within CA264_13065 at 3046.564 kb on - strand, within CA264_13065 at 3046.565 kb on + strand, within CA264_13065 at 3046.565 kb on + strand, within CA264_13065 at 3046.565 kb on + strand, within CA264_13065 at 3046.565 kb on + strand, within CA264_13065 at 3046.565 kb on + strand, within CA264_13065 at 3046.568 kb on + strand, within CA264_13065 at 3046.820 kb on + strand, within CA264_13065 at 3046.820 kb on + strand, within CA264_13065 at 3046.827 kb on + strand, within CA264_13065 at 3046.829 kb on + strand, within CA264_13065 at 3046.830 kb on - strand, within CA264_13065 at 3046.910 kb on - strand, within CA264_13065 at 3046.910 kb on - strand, within CA264_13065
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM remove 3,044,906 - CA264_13055 0.74 -0.5 3,044,920 - CA264_13055 0.75 -0.5 3,044,920 - CA264_13055 0.75 -1.0 3,044,925 + CA264_13055 0.75 +0.2 3,044,925 + CA264_13055 0.75 -1.9 3,044,926 - CA264_13055 0.75 +0.4 3,044,936 + CA264_13055 0.76 +3.4 3,044,937 - CA264_13055 0.76 -0.7 3,044,937 - CA264_13055 0.76 -0.0 3,044,951 + CA264_13055 0.77 -0.2 3,044,995 - CA264_13055 0.79 -1.0 3,045,152 + CA264_13055 0.86 +0.0 3,045,277 + +0.8 3,045,309 + +0.2 3,045,310 - +1.7 3,045,312 - -0.5 3,045,316 + -0.4 3,045,316 + -0.5 3,045,316 + -1.2 3,045,317 - -0.1 3,045,317 - -1.0 3,045,351 + +0.5 3,045,412 - -0.2 3,045,479 - -0.6 3,045,502 - -0.3 3,045,502 - +1.1 3,045,502 - +1.1 3,045,504 - +1.7 3,045,504 - -0.5 3,045,543 - +1.2 3,045,588 - -0.9 3,045,641 - +1.1 3,045,681 + +0.3 3,045,681 + -0.5 3,045,689 + +1.4 3,045,828 + +1.1 3,045,999 + -1.8 3,046,000 - -0.7 3,046,108 + +1.1 3,046,131 + +0.1 3,046,186 - -0.1 3,046,186 - +1.1 3,046,243 - CA264_13065 0.11 -1.6 3,046,267 + CA264_13065 0.12 -0.2 3,046,274 + CA264_13065 0.12 +0.2 3,046,322 + CA264_13065 0.15 -0.9 3,046,322 + CA264_13065 0.15 +0.6 3,046,323 - CA264_13065 0.15 -0.3 3,046,323 - CA264_13065 0.15 -1.7 3,046,323 - CA264_13065 0.15 +1.1 3,046,323 - CA264_13065 0.15 -0.1 3,046,325 - CA264_13065 0.15 -0.7 3,046,325 - CA264_13065 0.15 -0.7 3,046,350 + CA264_13065 0.16 -1.2 3,046,350 + CA264_13065 0.16 +1.1 3,046,351 - CA264_13065 0.16 +0.2 3,046,351 - CA264_13065 0.16 -0.9 3,046,444 + CA264_13065 0.21 -0.5 3,046,445 - CA264_13065 0.21 +0.7 3,046,445 - CA264_13065 0.21 -0.3 3,046,492 - CA264_13065 0.24 -0.6 3,046,563 + CA264_13065 0.28 -0.2 3,046,563 + CA264_13065 0.28 +0.6 3,046,563 + CA264_13065 0.28 +2.7 3,046,563 + CA264_13065 0.28 -0.2 3,046,563 + CA264_13065 0.28 +0.9 3,046,563 + CA264_13065 0.28 +0.3 3,046,563 + CA264_13065 0.28 -0.1 3,046,564 - CA264_13065 0.28 -0.6 3,046,564 - CA264_13065 0.28 -0.1 3,046,564 - CA264_13065 0.28 +0.1 3,046,565 + CA264_13065 0.28 +0.1 3,046,565 + CA264_13065 0.28 -1.0 3,046,565 + CA264_13065 0.28 +0.1 3,046,565 + CA264_13065 0.28 -1.0 3,046,565 + CA264_13065 0.28 -0.1 3,046,568 + CA264_13065 0.28 -0.7 3,046,820 + CA264_13065 0.42 +1.7 3,046,820 + CA264_13065 0.42 +0.3 3,046,827 + CA264_13065 0.42 -0.3 3,046,829 + CA264_13065 0.42 -0.3 3,046,830 - CA264_13065 0.42 +0.4 3,046,910 - CA264_13065 0.46 -0.9 3,046,910 - CA264_13065 0.46 -0.9
Or see this region's nucleotide sequence