Experiment: marine_broth_2216 with Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_11045 and CA264_11050 are separated by 96 nucleotides CA264_11050 and CA264_11055 are separated by 116 nucleotides CA264_11055 and CA264_11060 are separated by 119 nucleotides CA264_11060 and CA264_11065 are separated by 14 nucleotides CA264_11065 and CA264_11070 are separated by 11 nucleotides
CA264_11045: CA264_11045 - threonylcarbamoyl-AMP synthase, at 2,551,108 to 2,551,680
_11045
CA264_11050: CA264_11050 - methylmalonyl-CoA epimerase, at 2,551,777 to 2,552,178
_11050
CA264_11055: CA264_11055 - cysteine desulfurase, at 2,552,295 to 2,553,509
_11055
CA264_11060: CA264_11060 - iron-sulfur cluster scaffold-like protein, at 2,553,629 to 2,554,042
_11060
CA264_11065: CA264_11065 - hypothetical protein, at 2,554,057 to 2,554,464
_11065
CA264_11070: CA264_11070 - iron-sulfur cluster assembly accessory protein, at 2,554,476 to 2,554,802
_11070
Position (kb)
2552
2553
2554 Strain fitness (log2 ratio)
-2
-1
0
1 at 2551.669 kb on + strand at 2551.783 kb on + strand at 2551.924 kb on + strand, within CA264_11050 at 2551.924 kb on + strand, within CA264_11050 at 2551.924 kb on + strand, within CA264_11050 at 2551.947 kb on + strand, within CA264_11050 at 2551.947 kb on + strand, within CA264_11050 at 2551.948 kb on - strand, within CA264_11050 at 2552.038 kb on + strand, within CA264_11050 at 2552.090 kb on + strand, within CA264_11050 at 2552.090 kb on + strand, within CA264_11050 at 2552.161 kb on - strand at 2552.167 kb on + strand at 2552.168 kb on - strand at 2552.190 kb on - strand at 2552.202 kb on + strand at 2552.239 kb on + strand at 2553.482 kb on + strand at 2553.594 kb on - strand at 2554.121 kb on + strand, within CA264_11065 at 2554.127 kb on + strand, within CA264_11065 at 2554.127 kb on + strand, within CA264_11065 at 2554.127 kb on + strand, within CA264_11065 at 2554.127 kb on + strand, within CA264_11065 at 2554.191 kb on + strand, within CA264_11065 at 2554.191 kb on + strand, within CA264_11065 at 2554.312 kb on + strand, within CA264_11065 at 2554.375 kb on - strand, within CA264_11065 at 2554.381 kb on + strand, within CA264_11065 at 2554.381 kb on + strand, within CA264_11065 at 2554.381 kb on + strand, within CA264_11065 at 2554.381 kb on + strand, within CA264_11065 at 2554.382 kb on - strand, within CA264_11065 at 2554.400 kb on + strand, within CA264_11065 at 2554.406 kb on - strand, within CA264_11065 at 2554.425 kb on + strand at 2554.425 kb on + strand at 2554.425 kb on + strand at 2554.425 kb on + strand at 2554.426 kb on - strand at 2554.427 kb on + strand at 2554.446 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM remove 2,551,669 + -1.8 2,551,783 + -1.1 2,551,924 + CA264_11050 0.37 -0.8 2,551,924 + CA264_11050 0.37 +0.8 2,551,924 + CA264_11050 0.37 -0.5 2,551,947 + CA264_11050 0.42 -0.6 2,551,947 + CA264_11050 0.42 -1.2 2,551,948 - CA264_11050 0.43 -2.7 2,552,038 + CA264_11050 0.65 -0.2 2,552,090 + CA264_11050 0.78 -1.5 2,552,090 + CA264_11050 0.78 -1.3 2,552,161 - +0.4 2,552,167 + -0.6 2,552,168 - -0.3 2,552,190 - -0.0 2,552,202 + -0.6 2,552,239 + -0.6 2,553,482 + +1.0 2,553,594 - +1.0 2,554,121 + CA264_11065 0.16 -0.5 2,554,127 + CA264_11065 0.17 -0.1 2,554,127 + CA264_11065 0.17 +0.6 2,554,127 + CA264_11065 0.17 -0.3 2,554,127 + CA264_11065 0.17 -0.4 2,554,191 + CA264_11065 0.33 -1.3 2,554,191 + CA264_11065 0.33 +0.4 2,554,312 + CA264_11065 0.62 +0.0 2,554,375 - CA264_11065 0.78 -0.6 2,554,381 + CA264_11065 0.79 +0.0 2,554,381 + CA264_11065 0.79 -0.4 2,554,381 + CA264_11065 0.79 -0.5 2,554,381 + CA264_11065 0.79 -0.4 2,554,382 - CA264_11065 0.80 -0.8 2,554,400 + CA264_11065 0.84 -1.2 2,554,406 - CA264_11065 0.86 -0.2 2,554,425 + +1.0 2,554,425 + +1.0 2,554,425 + -0.5 2,554,425 + -1.1 2,554,426 - +0.6 2,554,427 + +1.2 2,554,446 - +0.3
Or see this region's nucleotide sequence