Experiment: marine_broth_2216 with Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03510 and CA264_03515 are separated by 265 nucleotides CA264_03515 and CA264_03520 are separated by 153 nucleotides
CA264_03510: CA264_03510 - hypothetical protein, at 818,304 to 818,891
_03510
CA264_03515: CA264_03515 - hypothetical protein, at 819,157 to 819,561
_03515
CA264_03520: CA264_03520 - hypothetical protein, at 819,715 to 820,194
_03520
Position (kb) 819
820 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 818.168 kb on - strand at 818.222 kb on + strand at 818.237 kb on - strand at 818.266 kb on + strand at 818.266 kb on + strand at 818.267 kb on - strand at 818.267 kb on - strand at 818.303 kb on + strand at 818.304 kb on - strand at 818.304 kb on - strand at 818.355 kb on + strand at 818.394 kb on + strand, within CA264_03510 at 818.394 kb on + strand, within CA264_03510 at 818.395 kb on - strand, within CA264_03510 at 818.436 kb on + strand, within CA264_03510 at 818.484 kb on + strand, within CA264_03510 at 818.485 kb on - strand, within CA264_03510 at 818.485 kb on - strand, within CA264_03510 at 818.511 kb on + strand, within CA264_03510 at 818.512 kb on - strand, within CA264_03510 at 818.542 kb on - strand, within CA264_03510 at 818.595 kb on + strand, within CA264_03510 at 818.596 kb on - strand, within CA264_03510 at 818.631 kb on + strand, within CA264_03510 at 818.632 kb on - strand, within CA264_03510 at 818.651 kb on + strand, within CA264_03510 at 818.692 kb on - strand, within CA264_03510 at 818.782 kb on - strand, within CA264_03510 at 818.887 kb on - strand at 818.887 kb on - strand at 818.887 kb on - strand at 818.902 kb on + strand at 819.047 kb on + strand at 819.141 kb on + strand at 819.153 kb on + strand at 819.153 kb on + strand at 819.154 kb on - strand at 819.154 kb on - strand at 819.154 kb on - strand at 819.154 kb on - strand at 819.154 kb on - strand at 819.154 kb on - strand at 819.154 kb on - strand at 819.158 kb on + strand at 819.161 kb on + strand at 819.161 kb on + strand at 819.162 kb on - strand at 819.277 kb on - strand, within CA264_03515 at 819.316 kb on + strand, within CA264_03515 at 819.316 kb on + strand, within CA264_03515 at 819.317 kb on - strand, within CA264_03515 at 819.326 kb on + strand, within CA264_03515 at 819.326 kb on + strand, within CA264_03515 at 819.326 kb on + strand, within CA264_03515 at 819.327 kb on - strand, within CA264_03515 at 819.338 kb on + strand, within CA264_03515 at 819.398 kb on + strand, within CA264_03515 at 819.487 kb on - strand, within CA264_03515 at 819.529 kb on + strand at 819.550 kb on + strand at 819.565 kb on + strand at 819.573 kb on + strand at 819.573 kb on + strand at 819.575 kb on + strand at 819.576 kb on - strand at 819.584 kb on + strand at 819.584 kb on + strand at 819.584 kb on + strand at 819.585 kb on - strand at 819.585 kb on - strand at 819.618 kb on - strand at 819.697 kb on + strand at 819.697 kb on + strand at 819.697 kb on + strand at 819.698 kb on - strand at 819.698 kb on - strand at 819.742 kb on - strand at 819.743 kb on + strand at 819.743 kb on + strand at 819.744 kb on - strand at 819.751 kb on + strand at 819.857 kb on + strand, within CA264_03520 at 819.858 kb on - strand, within CA264_03520 at 819.890 kb on - strand, within CA264_03520 at 819.922 kb on - strand, within CA264_03520 at 819.923 kb on + strand, within CA264_03520 at 819.924 kb on - strand, within CA264_03520 at 819.924 kb on - strand, within CA264_03520 at 819.924 kb on - strand, within CA264_03520 at 819.924 kb on - strand, within CA264_03520 at 819.931 kb on + strand, within CA264_03520 at 819.931 kb on + strand, within CA264_03520 at 819.931 kb on + strand, within CA264_03520 at 819.932 kb on - strand, within CA264_03520 at 819.932 kb on - strand, within CA264_03520 at 819.992 kb on + strand, within CA264_03520 at 820.006 kb on + strand, within CA264_03520 at 820.020 kb on - strand, within CA264_03520 at 820.046 kb on + strand, within CA264_03520 at 820.046 kb on + strand, within CA264_03520 at 820.197 kb on - strand at 820.209 kb on - strand at 820.225 kb on + strand at 820.253 kb on - strand at 820.284 kb on - strand at 820.284 kb on - strand at 820.284 kb on - strand at 820.286 kb on + strand at 820.286 kb on + strand at 820.310 kb on - strand at 820.348 kb on - strand at 820.413 kb on - strand at 820.490 kb on - strand at 820.493 kb on - strand at 820.495 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM remove 818,168 - -0.3 818,222 + -1.1 818,237 - -0.4 818,266 + +1.0 818,266 + -0.1 818,267 - +0.4 818,267 - +1.0 818,303 + -0.5 818,304 - +0.1 818,304 - -0.1 818,355 + -1.0 818,394 + CA264_03510 0.15 +0.1 818,394 + CA264_03510 0.15 +3.0 818,395 - CA264_03510 0.15 +0.0 818,436 + CA264_03510 0.22 -0.8 818,484 + CA264_03510 0.31 -0.4 818,485 - CA264_03510 0.31 +0.1 818,485 - CA264_03510 0.31 +0.5 818,511 + CA264_03510 0.35 -0.4 818,512 - CA264_03510 0.35 -0.4 818,542 - CA264_03510 0.40 +0.6 818,595 + CA264_03510 0.49 +0.8 818,596 - CA264_03510 0.50 +0.4 818,631 + CA264_03510 0.56 -0.2 818,632 - CA264_03510 0.56 +0.6 818,651 + CA264_03510 0.59 +0.4 818,692 - CA264_03510 0.66 -0.7 818,782 - CA264_03510 0.81 +0.8 818,887 - +0.0 818,887 - -0.2 818,887 - +0.0 818,902 + -0.0 819,047 + -1.3 819,141 + -0.2 819,153 + -0.5 819,153 + -0.5 819,154 - -1.8 819,154 - -2.1 819,154 - +0.1 819,154 - -0.6 819,154 - +0.0 819,154 - -0.6 819,154 - +1.4 819,158 + -0.1 819,161 + -0.2 819,161 + +1.6 819,162 - -0.1 819,277 - CA264_03515 0.30 -0.0 819,316 + CA264_03515 0.39 -0.5 819,316 + CA264_03515 0.39 +0.3 819,317 - CA264_03515 0.40 -0.8 819,326 + CA264_03515 0.42 +0.2 819,326 + CA264_03515 0.42 -1.3 819,326 + CA264_03515 0.42 -2.0 819,327 - CA264_03515 0.42 +0.2 819,338 + CA264_03515 0.45 -2.3 819,398 + CA264_03515 0.60 -1.0 819,487 - CA264_03515 0.81 -0.5 819,529 + +0.6 819,550 + -0.1 819,565 + -0.4 819,573 + +2.0 819,573 + -0.0 819,575 + -1.2 819,576 - +0.2 819,584 + +0.0 819,584 + -0.7 819,584 + +0.1 819,585 - +1.0 819,585 - +1.8 819,618 - -1.8 819,697 + +0.6 819,697 + -1.3 819,697 + -0.8 819,698 - -0.0 819,698 - -0.1 819,742 - +0.4 819,743 + -0.2 819,743 + -0.3 819,744 - +1.0 819,751 + +0.3 819,857 + CA264_03520 0.30 -0.2 819,858 - CA264_03520 0.30 -0.3 819,890 - CA264_03520 0.36 +1.0 819,922 - CA264_03520 0.43 +0.1 819,923 + CA264_03520 0.43 -1.1 819,924 - CA264_03520 0.44 +1.0 819,924 - CA264_03520 0.44 -0.2 819,924 - CA264_03520 0.44 +0.0 819,924 - CA264_03520 0.44 -0.5 819,931 + CA264_03520 0.45 -1.0 819,931 + CA264_03520 0.45 -0.6 819,931 + CA264_03520 0.45 -0.2 819,932 - CA264_03520 0.45 -0.2 819,932 - CA264_03520 0.45 -0.1 819,992 + CA264_03520 0.58 +0.2 820,006 + CA264_03520 0.61 +0.5 820,020 - CA264_03520 0.64 +0.4 820,046 + CA264_03520 0.69 +0.2 820,046 + CA264_03520 0.69 +1.0 820,197 - -0.1 820,209 - -0.5 820,225 + -0.2 820,253 - -0.0 820,284 - -0.1 820,284 - +0.3 820,284 - -0.7 820,286 + -0.3 820,286 + -0.1 820,310 - -0.6 820,348 - -0.2 820,413 - +0.2 820,490 - +1.0 820,493 - +0.0 820,495 - -0.1
Or see this region's nucleotide sequence