Experiment: marine_broth_2216 with Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02845 and CA264_02850 are separated by 86 nucleotides CA264_02850 and CA264_02855 are separated by 66 nucleotides CA264_02855 and CA264_02860 are separated by 60 nucleotides CA264_02860 and CA264_02865 are separated by 187 nucleotides
CA264_02845: CA264_02845 - hypothetical protein, at 653,589 to 654,098
_02845
CA264_02850: CA264_02850 - potassium channel protein, at 654,185 to 655,030
_02850
CA264_02855: CA264_02855 - metal-dependent phosphohydrolase, at 655,097 to 655,660
_02855
CA264_02860: CA264_02860 - hypothetical protein, at 655,721 to 655,912
_02860
CA264_02865: CA264_02865 - fatty acid hydroxylase, at 656,100 to 657,062
_02865
Position (kb) 655
656 Strain fitness (log2 ratio) -2
-1
0
1 at 654.116 kb on - strand at 654.174 kb on - strand at 654.243 kb on - strand at 654.321 kb on + strand, within CA264_02850 at 654.322 kb on - strand, within CA264_02850 at 654.322 kb on - strand, within CA264_02850 at 654.322 kb on - strand, within CA264_02850 at 654.331 kb on + strand, within CA264_02850 at 654.332 kb on - strand, within CA264_02850 at 654.332 kb on - strand, within CA264_02850 at 654.332 kb on - strand, within CA264_02850 at 654.373 kb on + strand, within CA264_02850 at 654.373 kb on + strand, within CA264_02850 at 654.388 kb on + strand, within CA264_02850 at 654.388 kb on + strand, within CA264_02850 at 654.389 kb on - strand, within CA264_02850 at 654.390 kb on + strand, within CA264_02850 at 654.414 kb on + strand, within CA264_02850 at 654.523 kb on - strand, within CA264_02850 at 654.559 kb on - strand, within CA264_02850 at 654.577 kb on - strand, within CA264_02850 at 654.629 kb on + strand, within CA264_02850 at 654.680 kb on + strand, within CA264_02850 at 654.681 kb on - strand, within CA264_02850 at 654.699 kb on - strand, within CA264_02850 at 654.819 kb on - strand, within CA264_02850 at 654.844 kb on + strand, within CA264_02850 at 654.943 kb on - strand, within CA264_02850 at 655.026 kb on + strand at 655.027 kb on - strand at 655.027 kb on - strand at 655.027 kb on - strand at 655.028 kb on + strand at 655.035 kb on - strand at 655.035 kb on - strand at 655.035 kb on - strand at 655.055 kb on - strand at 655.066 kb on + strand at 655.106 kb on + strand at 655.106 kb on + strand at 655.106 kb on + strand at 655.107 kb on - strand at 655.262 kb on + strand, within CA264_02855 at 655.376 kb on + strand, within CA264_02855 at 655.432 kb on - strand, within CA264_02855 at 655.570 kb on - strand, within CA264_02855 at 655.594 kb on + strand, within CA264_02855 at 655.595 kb on - strand, within CA264_02855 at 655.597 kb on + strand, within CA264_02855 at 655.659 kb on - strand at 655.705 kb on - strand at 655.775 kb on + strand, within CA264_02860 at 655.788 kb on - strand, within CA264_02860 at 655.839 kb on - strand, within CA264_02860 at 655.846 kb on + strand, within CA264_02860 at 655.846 kb on + strand, within CA264_02860 at 655.912 kb on + strand at 655.912 kb on + strand at 655.941 kb on + strand at 655.942 kb on - strand at 656.068 kb on + strand at 656.074 kb on + strand at 656.075 kb on - strand at 656.082 kb on + strand at 656.083 kb on - strand at 656.113 kb on + strand at 656.132 kb on - strand at 656.163 kb on + strand at 656.164 kb on - strand at 656.164 kb on - strand at 656.217 kb on + strand, within CA264_02865 at 656.334 kb on - strand, within CA264_02865 at 656.337 kb on + strand, within CA264_02865 at 656.337 kb on + strand, within CA264_02865 at 656.338 kb on - strand, within CA264_02865 at 656.616 kb on + strand, within CA264_02865 at 656.616 kb on + strand, within CA264_02865 at 656.633 kb on + strand, within CA264_02865 at 656.634 kb on - strand, within CA264_02865
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM remove 654,116 - +0.0 654,174 - -0.3 654,243 - -0.8 654,321 + CA264_02850 0.16 -0.9 654,322 - CA264_02850 0.16 -0.3 654,322 - CA264_02850 0.16 +0.7 654,322 - CA264_02850 0.16 +0.0 654,331 + CA264_02850 0.17 -0.3 654,332 - CA264_02850 0.17 +0.4 654,332 - CA264_02850 0.17 +1.0 654,332 - CA264_02850 0.17 -0.6 654,373 + CA264_02850 0.22 +0.3 654,373 + CA264_02850 0.22 -0.5 654,388 + CA264_02850 0.24 -1.0 654,388 + CA264_02850 0.24 -0.4 654,389 - CA264_02850 0.24 +0.7 654,390 + CA264_02850 0.24 -0.4 654,414 + CA264_02850 0.27 +0.0 654,523 - CA264_02850 0.40 -0.0 654,559 - CA264_02850 0.44 -0.6 654,577 - CA264_02850 0.46 -1.3 654,629 + CA264_02850 0.52 -0.8 654,680 + CA264_02850 0.59 -0.8 654,681 - CA264_02850 0.59 +0.3 654,699 - CA264_02850 0.61 -0.4 654,819 - CA264_02850 0.75 -0.9 654,844 + CA264_02850 0.78 +1.0 654,943 - CA264_02850 0.90 -0.0 655,026 + +0.7 655,027 - +0.4 655,027 - +0.7 655,027 - -1.8 655,028 + -1.2 655,035 - -1.4 655,035 - +0.2 655,035 - -0.7 655,055 - -0.1 655,066 + -0.7 655,106 + -1.0 655,106 + -0.1 655,106 + +0.8 655,107 - -0.1 655,262 + CA264_02855 0.29 -1.9 655,376 + CA264_02855 0.49 +0.7 655,432 - CA264_02855 0.59 +0.1 655,570 - CA264_02855 0.84 +0.7 655,594 + CA264_02855 0.88 +0.4 655,595 - CA264_02855 0.88 +0.1 655,597 + CA264_02855 0.89 -0.2 655,659 - -0.3 655,705 - -1.0 655,775 + CA264_02860 0.28 +0.1 655,788 - CA264_02860 0.35 -0.2 655,839 - CA264_02860 0.61 +0.5 655,846 + CA264_02860 0.65 -0.8 655,846 + CA264_02860 0.65 -0.4 655,912 + -0.8 655,912 + +0.1 655,941 + +0.5 655,942 - +0.1 656,068 + -0.9 656,074 + +0.2 656,075 - +0.5 656,082 + -1.5 656,083 - -0.5 656,113 + -0.2 656,132 - +1.1 656,163 + -0.3 656,164 - +0.5 656,164 - -1.1 656,217 + CA264_02865 0.12 -0.2 656,334 - CA264_02865 0.24 -0.4 656,337 + CA264_02865 0.25 -0.2 656,337 + CA264_02865 0.25 -0.7 656,338 - CA264_02865 0.25 -1.9 656,616 + CA264_02865 0.54 +1.6 656,616 + CA264_02865 0.54 +0.2 656,633 + CA264_02865 0.55 -0.3 656,634 - CA264_02865 0.55 -0.2
Or see this region's nucleotide sequence