Experiment: marine_broth_2216 with Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01480 and CA264_01485 are separated by 90 nucleotides CA264_01485 and CA264_01490 are separated by 29 nucleotides CA264_01490 and CA264_01495 are separated by 3 nucleotides
CA264_01480: CA264_01480 - dihydroorotase, at 351,644 to 352,909
_01480
CA264_01485: CA264_01485 - hypothetical protein, at 353,000 to 353,479
_01485
CA264_01490: CA264_01490 - DUF4199 domain-containing protein, at 353,509 to 354,027
_01490
CA264_01495: CA264_01495 - glycosyltransferase, at 354,031 to 355,005
_01495
Position (kb) 352
353
354 Strain fitness (log2 ratio) -2
-1
0
1
2 at 352.470 kb on + strand, within CA264_01480 at 352.470 kb on + strand, within CA264_01480 at 352.511 kb on - strand, within CA264_01480 at 352.821 kb on - strand at 352.910 kb on + strand at 352.913 kb on - strand at 352.913 kb on - strand at 352.916 kb on + strand at 352.916 kb on + strand at 352.918 kb on + strand at 352.918 kb on + strand at 352.919 kb on - strand at 352.969 kb on + strand at 352.969 kb on + strand at 352.970 kb on - strand at 353.002 kb on - strand at 353.041 kb on - strand at 353.067 kb on - strand, within CA264_01485 at 353.100 kb on - strand, within CA264_01485 at 353.141 kb on + strand, within CA264_01485 at 353.143 kb on + strand, within CA264_01485 at 353.150 kb on + strand, within CA264_01485 at 353.250 kb on + strand, within CA264_01485 at 353.273 kb on - strand, within CA264_01485 at 353.331 kb on + strand, within CA264_01485 at 353.395 kb on + strand, within CA264_01485 at 353.395 kb on + strand, within CA264_01485 at 353.396 kb on - strand, within CA264_01485 at 353.464 kb on - strand at 353.477 kb on + strand at 353.477 kb on + strand at 353.540 kb on + strand at 353.541 kb on - strand at 353.547 kb on - strand at 353.592 kb on + strand, within CA264_01490 at 353.592 kb on + strand, within CA264_01490 at 353.592 kb on + strand, within CA264_01490 at 353.592 kb on + strand, within CA264_01490 at 353.593 kb on - strand, within CA264_01490 at 353.594 kb on + strand, within CA264_01490 at 353.594 kb on + strand, within CA264_01490 at 353.594 kb on + strand, within CA264_01490 at 353.701 kb on + strand, within CA264_01490 at 353.702 kb on - strand, within CA264_01490 at 353.702 kb on - strand, within CA264_01490 at 353.702 kb on - strand, within CA264_01490 at 353.707 kb on + strand, within CA264_01490 at 353.708 kb on - strand, within CA264_01490 at 353.709 kb on + strand, within CA264_01490 at 353.709 kb on + strand, within CA264_01490 at 353.709 kb on + strand, within CA264_01490 at 353.709 kb on + strand, within CA264_01490 at 353.709 kb on + strand, within CA264_01490 at 353.710 kb on - strand, within CA264_01490 at 353.710 kb on - strand, within CA264_01490 at 353.782 kb on - strand, within CA264_01490 at 353.782 kb on - strand, within CA264_01490 at 353.815 kb on + strand, within CA264_01490 at 353.963 kb on + strand, within CA264_01490
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM remove 352,470 + CA264_01480 0.65 -0.4 352,470 + CA264_01480 0.65 -0.6 352,511 - CA264_01480 0.68 -1.5 352,821 - +1.1 352,910 + -0.3 352,913 - +0.2 352,913 - -1.0 352,916 + +0.3 352,916 + +0.1 352,918 + +0.9 352,918 + -0.2 352,919 - +0.3 352,969 + +0.5 352,969 + -0.6 352,970 - -1.1 353,002 - +0.0 353,041 - +0.7 353,067 - CA264_01485 0.14 -0.2 353,100 - CA264_01485 0.21 -0.7 353,141 + CA264_01485 0.29 -0.5 353,143 + CA264_01485 0.30 -1.2 353,150 + CA264_01485 0.31 -0.7 353,250 + CA264_01485 0.52 -0.7 353,273 - CA264_01485 0.57 +0.6 353,331 + CA264_01485 0.69 +2.7 353,395 + CA264_01485 0.82 -0.9 353,395 + CA264_01485 0.82 +1.5 353,396 - CA264_01485 0.82 -0.6 353,464 - -1.2 353,477 + -0.2 353,477 + +0.0 353,540 + +0.1 353,541 - +0.4 353,547 - +0.2 353,592 + CA264_01490 0.16 -1.1 353,592 + CA264_01490 0.16 -0.3 353,592 + CA264_01490 0.16 -0.7 353,592 + CA264_01490 0.16 +0.3 353,593 - CA264_01490 0.16 -0.5 353,594 + CA264_01490 0.16 +1.7 353,594 + CA264_01490 0.16 +1.1 353,594 + CA264_01490 0.16 -0.0 353,701 + CA264_01490 0.37 -0.5 353,702 - CA264_01490 0.37 -0.8 353,702 - CA264_01490 0.37 +1.4 353,702 - CA264_01490 0.37 +0.2 353,707 + CA264_01490 0.38 -0.6 353,708 - CA264_01490 0.38 -0.4 353,709 + CA264_01490 0.39 +0.0 353,709 + CA264_01490 0.39 -0.8 353,709 + CA264_01490 0.39 -2.2 353,709 + CA264_01490 0.39 -0.2 353,709 + CA264_01490 0.39 -0.9 353,710 - CA264_01490 0.39 -0.7 353,710 - CA264_01490 0.39 -0.0 353,782 - CA264_01490 0.53 -0.6 353,782 - CA264_01490 0.53 -1.2 353,815 + CA264_01490 0.59 -0.7 353,963 + CA264_01490 0.87 -0.1
Or see this region's nucleotide sequence