Experiment: marine_broth_2216 with Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01035 and CA264_01040 are separated by 283 nucleotides CA264_01040 and CA264_01045 are separated by 25 nucleotides
CA264_01035: CA264_01035 - hypothetical protein, at 228,935 to 230,023
_01035
CA264_01040: CA264_01040 - hypothetical protein, at 230,307 to 230,729
_01040
CA264_01045: CA264_01045 - hypothetical protein, at 230,755 to 231,579
_01045
Position (kb)
228
229
230
231 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 227.968 kb on + strand at 227.968 kb on + strand at 227.972 kb on - strand at 228.021 kb on - strand at 228.021 kb on - strand at 228.024 kb on - strand at 228.031 kb on + strand at 228.035 kb on + strand at 228.045 kb on + strand at 228.110 kb on + strand at 228.111 kb on - strand at 228.111 kb on - strand at 228.142 kb on + strand at 228.143 kb on - strand at 228.143 kb on - strand at 228.146 kb on + strand at 228.146 kb on + strand at 228.154 kb on + strand at 228.155 kb on - strand at 228.158 kb on + strand at 228.207 kb on + strand at 228.237 kb on - strand at 228.240 kb on - strand at 228.304 kb on + strand at 228.309 kb on + strand at 228.340 kb on + strand at 228.344 kb on + strand at 228.345 kb on - strand at 228.387 kb on + strand at 228.388 kb on - strand at 228.406 kb on + strand at 228.515 kb on - strand at 228.685 kb on - strand at 228.703 kb on + strand at 228.704 kb on - strand at 228.708 kb on + strand at 228.736 kb on + strand at 228.759 kb on - strand at 228.762 kb on - strand at 228.804 kb on - strand at 228.954 kb on - strand at 228.970 kb on - strand at 228.973 kb on - strand at 228.975 kb on + strand at 228.975 kb on + strand at 228.976 kb on - strand at 228.984 kb on + strand at 228.985 kb on - strand at 228.985 kb on - strand at 229.001 kb on - strand at 229.011 kb on + strand at 229.020 kb on + strand at 229.039 kb on + strand at 229.039 kb on + strand at 229.051 kb on + strand, within CA264_01035 at 229.052 kb on - strand, within CA264_01035 at 229.055 kb on - strand, within CA264_01035 at 229.078 kb on + strand, within CA264_01035 at 229.078 kb on + strand, within CA264_01035 at 229.078 kb on + strand, within CA264_01035 at 229.079 kb on - strand, within CA264_01035 at 229.952 kb on + strand at 229.953 kb on - strand at 229.969 kb on + strand at 229.975 kb on + strand at 230.021 kb on + strand at 230.022 kb on - strand at 230.029 kb on - strand at 230.030 kb on + strand at 230.031 kb on - strand at 230.040 kb on + strand at 230.041 kb on - strand at 230.060 kb on + strand at 230.061 kb on - strand at 230.086 kb on + strand at 230.086 kb on + strand at 230.087 kb on - strand at 230.217 kb on - strand at 230.217 kb on - strand at 230.236 kb on + strand at 230.242 kb on - strand at 230.242 kb on - strand at 230.242 kb on - strand at 230.243 kb on + strand at 230.244 kb on - strand at 230.244 kb on - strand at 230.244 kb on - strand at 230.244 kb on - strand at 230.245 kb on + strand at 230.246 kb on - strand at 230.247 kb on + strand at 230.247 kb on + strand at 230.247 kb on + strand at 230.247 kb on + strand at 230.247 kb on + strand at 230.247 kb on + strand at 230.248 kb on - strand at 230.248 kb on - strand at 230.248 kb on - strand at 230.261 kb on + strand at 230.261 kb on + strand at 230.262 kb on - strand at 230.276 kb on + strand at 230.276 kb on + strand at 230.299 kb on + strand at 230.603 kb on + strand, within CA264_01040 at 230.621 kb on - strand, within CA264_01040 at 230.635 kb on - strand, within CA264_01040 at 230.635 kb on - strand, within CA264_01040 at 230.702 kb on - strand at 230.723 kb on - strand at 230.728 kb on - strand at 230.728 kb on - strand at 230.742 kb on - strand at 230.761 kb on + strand at 230.761 kb on + strand at 230.761 kb on + strand at 230.987 kb on - strand, within CA264_01045 at 230.987 kb on - strand, within CA264_01045 at 230.996 kb on + strand, within CA264_01045 at 231.018 kb on - strand, within CA264_01045 at 231.018 kb on - strand, within CA264_01045
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM remove 227,968 + +0.4 227,968 + -0.0 227,972 - -1.2 228,021 - -0.0 228,021 - +0.2 228,024 - +1.7 228,031 + +0.2 228,035 + +0.1 228,045 + -0.4 228,110 + -0.1 228,111 - +0.1 228,111 - +0.4 228,142 + +0.5 228,143 - -0.2 228,143 - +1.1 228,146 + +0.9 228,146 + +0.3 228,154 + +0.2 228,155 - +0.1 228,158 + -0.7 228,207 + +0.1 228,237 - +0.4 228,240 - +0.3 228,304 + +0.2 228,309 + -0.3 228,340 + -1.7 228,344 + +0.1 228,345 - +0.8 228,387 + -0.7 228,388 - +0.7 228,406 + +0.5 228,515 - +0.7 228,685 - +0.7 228,703 + -0.2 228,704 - +0.0 228,708 + -0.6 228,736 + +0.3 228,759 - -0.4 228,762 - +0.3 228,804 - +0.4 228,954 - +0.4 228,970 - +0.1 228,973 - -0.3 228,975 + -0.4 228,975 + -0.3 228,976 - +0.4 228,984 + -1.0 228,985 - +0.1 228,985 - -0.7 229,001 - +0.1 229,011 + +1.5 229,020 + +0.4 229,039 + -0.5 229,039 + -1.2 229,051 + CA264_01035 0.11 +0.4 229,052 - CA264_01035 0.11 +0.2 229,055 - CA264_01035 0.11 +0.7 229,078 + CA264_01035 0.13 -0.1 229,078 + CA264_01035 0.13 +0.2 229,078 + CA264_01035 0.13 +0.6 229,079 - CA264_01035 0.13 -0.1 229,952 + +0.2 229,953 - -0.2 229,969 + -1.6 229,975 + -0.1 230,021 + +1.0 230,022 - +0.0 230,029 - +0.7 230,030 + -1.3 230,031 - +0.7 230,040 + -1.9 230,041 - +0.0 230,060 + -1.4 230,061 - +0.0 230,086 + +0.5 230,086 + +0.3 230,087 - +0.9 230,217 - -0.4 230,217 - -0.4 230,236 + +0.5 230,242 - -1.2 230,242 - +0.1 230,242 - +0.4 230,243 + -0.2 230,244 - +1.6 230,244 - -0.3 230,244 - -0.0 230,244 - -2.9 230,245 + +0.6 230,246 - +0.8 230,247 + +0.5 230,247 + -0.2 230,247 + +0.2 230,247 + +0.5 230,247 + -1.7 230,247 + +0.3 230,248 - +0.2 230,248 - -0.7 230,248 - -1.4 230,261 + +0.1 230,261 + +0.6 230,262 - +0.0 230,276 + -0.1 230,276 + -0.8 230,299 + +0.1 230,603 + CA264_01040 0.70 -1.2 230,621 - CA264_01040 0.74 +0.2 230,635 - CA264_01040 0.78 +0.3 230,635 - CA264_01040 0.78 -0.0 230,702 - -0.4 230,723 - +0.1 230,728 - +0.7 230,728 - -0.4 230,742 - +0.1 230,761 + +0.6 230,761 + +0.1 230,761 + +0.6 230,987 - CA264_01045 0.28 -0.3 230,987 - CA264_01045 0.28 +2.1 230,996 + CA264_01045 0.29 -1.2 231,018 - CA264_01045 0.32 +0.1 231,018 - CA264_01045 0.32 +0.3
Or see this region's nucleotide sequence