Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01035

Experiment: marine_broth_2216 with Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01035 and CA264_01040 are separated by 283 nucleotidesCA264_01040 and CA264_01045 are separated by 25 nucleotides CA264_01035: CA264_01035 - hypothetical protein, at 228,935 to 230,023 _01035 CA264_01040: CA264_01040 - hypothetical protein, at 230,307 to 230,729 _01040 CA264_01045: CA264_01045 - hypothetical protein, at 230,755 to 231,579 _01045 Position (kb) 228 229 230 231Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 227.968 kb on + strandat 227.968 kb on + strandat 227.972 kb on - strandat 228.021 kb on - strandat 228.021 kb on - strandat 228.024 kb on - strandat 228.031 kb on + strandat 228.035 kb on + strandat 228.045 kb on + strandat 228.110 kb on + strandat 228.111 kb on - strandat 228.111 kb on - strandat 228.142 kb on + strandat 228.143 kb on - strandat 228.143 kb on - strandat 228.146 kb on + strandat 228.146 kb on + strandat 228.154 kb on + strandat 228.155 kb on - strandat 228.158 kb on + strandat 228.207 kb on + strandat 228.237 kb on - strandat 228.240 kb on - strandat 228.304 kb on + strandat 228.309 kb on + strandat 228.340 kb on + strandat 228.344 kb on + strandat 228.345 kb on - strandat 228.387 kb on + strandat 228.388 kb on - strandat 228.406 kb on + strandat 228.515 kb on - strandat 228.685 kb on - strandat 228.703 kb on + strandat 228.704 kb on - strandat 228.708 kb on + strandat 228.736 kb on + strandat 228.759 kb on - strandat 228.762 kb on - strandat 228.804 kb on - strandat 228.954 kb on - strandat 228.970 kb on - strandat 228.973 kb on - strandat 228.975 kb on + strandat 228.975 kb on + strandat 228.976 kb on - strandat 228.984 kb on + strandat 228.985 kb on - strandat 228.985 kb on - strandat 229.001 kb on - strandat 229.011 kb on + strandat 229.020 kb on + strandat 229.039 kb on + strandat 229.039 kb on + strandat 229.051 kb on + strand, within CA264_01035at 229.052 kb on - strand, within CA264_01035at 229.055 kb on - strand, within CA264_01035at 229.078 kb on + strand, within CA264_01035at 229.078 kb on + strand, within CA264_01035at 229.078 kb on + strand, within CA264_01035at 229.079 kb on - strand, within CA264_01035at 229.952 kb on + strandat 229.953 kb on - strandat 229.969 kb on + strandat 229.975 kb on + strandat 230.021 kb on + strandat 230.022 kb on - strandat 230.029 kb on - strandat 230.030 kb on + strandat 230.031 kb on - strandat 230.040 kb on + strandat 230.041 kb on - strandat 230.060 kb on + strandat 230.061 kb on - strandat 230.086 kb on + strandat 230.086 kb on + strandat 230.087 kb on - strandat 230.217 kb on - strandat 230.217 kb on - strandat 230.236 kb on + strandat 230.242 kb on - strandat 230.242 kb on - strandat 230.242 kb on - strandat 230.243 kb on + strandat 230.244 kb on - strandat 230.244 kb on - strandat 230.244 kb on - strandat 230.244 kb on - strandat 230.245 kb on + strandat 230.246 kb on - strandat 230.247 kb on + strandat 230.247 kb on + strandat 230.247 kb on + strandat 230.247 kb on + strandat 230.247 kb on + strandat 230.247 kb on + strandat 230.248 kb on - strandat 230.248 kb on - strandat 230.248 kb on - strandat 230.261 kb on + strandat 230.261 kb on + strandat 230.262 kb on - strandat 230.276 kb on + strandat 230.276 kb on + strandat 230.299 kb on + strandat 230.603 kb on + strand, within CA264_01040at 230.621 kb on - strand, within CA264_01040at 230.635 kb on - strand, within CA264_01040at 230.635 kb on - strand, within CA264_01040at 230.702 kb on - strandat 230.723 kb on - strandat 230.728 kb on - strandat 230.728 kb on - strandat 230.742 kb on - strandat 230.761 kb on + strandat 230.761 kb on + strandat 230.761 kb on + strandat 230.987 kb on - strand, within CA264_01045at 230.987 kb on - strand, within CA264_01045at 230.996 kb on + strand, within CA264_01045at 231.018 kb on - strand, within CA264_01045at 231.018 kb on - strand, within CA264_01045

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM
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227,968 + +0.4
227,968 + -0.0
227,972 - -1.2
228,021 - -0.0
228,021 - +0.2
228,024 - +1.7
228,031 + +0.2
228,035 + +0.1
228,045 + -0.4
228,110 + -0.1
228,111 - +0.1
228,111 - +0.4
228,142 + +0.5
228,143 - -0.2
228,143 - +1.1
228,146 + +0.9
228,146 + +0.3
228,154 + +0.2
228,155 - +0.1
228,158 + -0.7
228,207 + +0.1
228,237 - +0.4
228,240 - +0.3
228,304 + +0.2
228,309 + -0.3
228,340 + -1.7
228,344 + +0.1
228,345 - +0.8
228,387 + -0.7
228,388 - +0.7
228,406 + +0.5
228,515 - +0.7
228,685 - +0.7
228,703 + -0.2
228,704 - +0.0
228,708 + -0.6
228,736 + +0.3
228,759 - -0.4
228,762 - +0.3
228,804 - +0.4
228,954 - +0.4
228,970 - +0.1
228,973 - -0.3
228,975 + -0.4
228,975 + -0.3
228,976 - +0.4
228,984 + -1.0
228,985 - +0.1
228,985 - -0.7
229,001 - +0.1
229,011 + +1.5
229,020 + +0.4
229,039 + -0.5
229,039 + -1.2
229,051 + CA264_01035 0.11 +0.4
229,052 - CA264_01035 0.11 +0.2
229,055 - CA264_01035 0.11 +0.7
229,078 + CA264_01035 0.13 -0.1
229,078 + CA264_01035 0.13 +0.2
229,078 + CA264_01035 0.13 +0.6
229,079 - CA264_01035 0.13 -0.1
229,952 + +0.2
229,953 - -0.2
229,969 + -1.6
229,975 + -0.1
230,021 + +1.0
230,022 - +0.0
230,029 - +0.7
230,030 + -1.3
230,031 - +0.7
230,040 + -1.9
230,041 - +0.0
230,060 + -1.4
230,061 - +0.0
230,086 + +0.5
230,086 + +0.3
230,087 - +0.9
230,217 - -0.4
230,217 - -0.4
230,236 + +0.5
230,242 - -1.2
230,242 - +0.1
230,242 - +0.4
230,243 + -0.2
230,244 - +1.6
230,244 - -0.3
230,244 - -0.0
230,244 - -2.9
230,245 + +0.6
230,246 - +0.8
230,247 + +0.5
230,247 + -0.2
230,247 + +0.2
230,247 + +0.5
230,247 + -1.7
230,247 + +0.3
230,248 - +0.2
230,248 - -0.7
230,248 - -1.4
230,261 + +0.1
230,261 + +0.6
230,262 - +0.0
230,276 + -0.1
230,276 + -0.8
230,299 + +0.1
230,603 + CA264_01040 0.70 -1.2
230,621 - CA264_01040 0.74 +0.2
230,635 - CA264_01040 0.78 +0.3
230,635 - CA264_01040 0.78 -0.0
230,702 - -0.4
230,723 - +0.1
230,728 - +0.7
230,728 - -0.4
230,742 - +0.1
230,761 + +0.6
230,761 + +0.1
230,761 + +0.6
230,987 - CA264_01045 0.28 -0.3
230,987 - CA264_01045 0.28 +2.1
230,996 + CA264_01045 0.29 -1.2
231,018 - CA264_01045 0.32 +0.1
231,018 - CA264_01045 0.32 +0.3

Or see this region's nucleotide sequence