Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00100

Experiment: marine_broth_2216 with Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00090 and CA264_00095 are separated by 15 nucleotidesCA264_00095 and CA264_00100 are separated by 23 nucleotidesCA264_00100 and CA264_00105 are separated by 612 nucleotides CA264_00090: CA264_00090 - histidine kinase, at 22,654 to 25,377 _00090 CA264_00095: CA264_00095 - response regulator, at 25,393 to 25,776 _00095 CA264_00100: CA264_00100 - acetate--CoA ligase, at 25,800 to 29,657 _00100 CA264_00105: CA264_00105 - nucleotidyltransferase, at 30,270 to 32,201 _00105 Position (kb) 25 26 27 28 29 30Strain fitness (log2 ratio) -2 -1 0 1 2at 24.840 kb on + strand, within CA264_00090at 24.918 kb on - strand, within CA264_00090at 25.005 kb on + strand, within CA264_00090at 25.005 kb on + strand, within CA264_00090at 25.005 kb on + strand, within CA264_00090at 25.006 kb on - strand, within CA264_00090at 25.006 kb on - strand, within CA264_00090at 25.031 kb on + strand, within CA264_00090at 25.031 kb on + strand, within CA264_00090at 25.051 kb on - strand, within CA264_00090at 25.098 kb on - strand, within CA264_00090at 25.111 kb on + strandat 25.272 kb on - strandat 25.272 kb on - strandat 25.346 kb on + strandat 25.374 kb on - strandat 25.382 kb on - strandat 25.382 kb on - strandat 25.393 kb on - strandat 25.393 kb on - strandat 25.399 kb on - strandat 25.399 kb on - strandat 25.443 kb on + strand, within CA264_00095at 25.444 kb on - strand, within CA264_00095at 25.446 kb on + strand, within CA264_00095at 25.447 kb on - strand, within CA264_00095at 25.569 kb on + strand, within CA264_00095at 25.569 kb on + strand, within CA264_00095at 25.598 kb on + strand, within CA264_00095at 25.599 kb on - strand, within CA264_00095at 25.712 kb on - strand, within CA264_00095at 25.800 kb on - strandat 25.831 kb on - strandat 25.853 kb on + strandat 25.853 kb on + strandat 25.853 kb on + strandat 25.854 kb on - strandat 25.950 kb on + strandat 25.951 kb on - strandat 25.959 kb on + strandat 26.077 kb on - strandat 26.082 kb on + strandat 26.167 kb on - strandat 26.178 kb on - strandat 26.228 kb on - strand, within CA264_00100at 26.460 kb on + strand, within CA264_00100at 26.464 kb on + strand, within CA264_00100at 26.465 kb on - strand, within CA264_00100at 26.465 kb on - strand, within CA264_00100at 26.465 kb on - strand, within CA264_00100at 26.527 kb on - strand, within CA264_00100at 26.527 kb on - strand, within CA264_00100at 26.530 kb on + strand, within CA264_00100at 26.530 kb on + strand, within CA264_00100at 26.531 kb on - strand, within CA264_00100at 26.531 kb on - strand, within CA264_00100at 26.531 kb on - strand, within CA264_00100at 26.531 kb on - strand, within CA264_00100at 26.535 kb on + strand, within CA264_00100at 26.536 kb on - strand, within CA264_00100at 26.608 kb on - strand, within CA264_00100at 26.608 kb on - strand, within CA264_00100at 26.608 kb on - strand, within CA264_00100at 26.632 kb on + strand, within CA264_00100at 26.692 kb on - strand, within CA264_00100at 26.692 kb on - strand, within CA264_00100at 26.804 kb on - strand, within CA264_00100at 26.940 kb on + strand, within CA264_00100at 26.940 kb on + strand, within CA264_00100at 26.941 kb on - strand, within CA264_00100at 26.941 kb on - strand, within CA264_00100at 26.944 kb on - strand, within CA264_00100at 26.944 kb on - strand, within CA264_00100at 27.243 kb on + strand, within CA264_00100at 27.265 kb on - strand, within CA264_00100at 27.288 kb on + strand, within CA264_00100at 27.288 kb on + strand, within CA264_00100at 27.288 kb on + strand, within CA264_00100at 27.289 kb on - strand, within CA264_00100at 27.289 kb on - strand, within CA264_00100at 27.289 kb on - strand, within CA264_00100at 27.289 kb on - strand, within CA264_00100at 27.453 kb on - strand, within CA264_00100at 27.453 kb on - strand, within CA264_00100at 27.534 kb on + strand, within CA264_00100at 27.737 kb on + strand, within CA264_00100at 27.748 kb on + strand, within CA264_00100at 27.768 kb on + strand, within CA264_00100at 27.776 kb on - strand, within CA264_00100at 27.776 kb on - strand, within CA264_00100at 27.776 kb on - strand, within CA264_00100at 27.776 kb on - strand, within CA264_00100at 27.776 kb on - strand, within CA264_00100at 27.783 kb on + strand, within CA264_00100at 27.804 kb on + strand, within CA264_00100at 27.861 kb on - strand, within CA264_00100at 28.042 kb on + strand, within CA264_00100at 28.047 kb on + strand, within CA264_00100at 28.047 kb on + strand, within CA264_00100at 28.127 kb on + strand, within CA264_00100at 28.127 kb on + strand, within CA264_00100at 28.128 kb on - strand, within CA264_00100at 28.132 kb on - strand, within CA264_00100at 28.346 kb on + strand, within CA264_00100at 28.346 kb on + strand, within CA264_00100at 28.346 kb on + strand, within CA264_00100at 28.347 kb on - strand, within CA264_00100at 28.347 kb on - strand, within CA264_00100at 28.369 kb on + strand, within CA264_00100at 28.370 kb on - strand, within CA264_00100at 28.494 kb on - strand, within CA264_00100at 28.494 kb on - strand, within CA264_00100at 28.500 kb on + strand, within CA264_00100at 28.515 kb on - strand, within CA264_00100at 28.612 kb on + strand, within CA264_00100at 28.612 kb on + strand, within CA264_00100at 28.612 kb on + strand, within CA264_00100at 28.612 kb on + strand, within CA264_00100at 28.612 kb on + strand, within CA264_00100at 28.613 kb on - strand, within CA264_00100at 28.614 kb on + strand, within CA264_00100at 28.614 kb on + strand, within CA264_00100at 28.615 kb on - strand, within CA264_00100at 28.665 kb on + strand, within CA264_00100at 28.754 kb on + strand, within CA264_00100at 28.754 kb on + strand, within CA264_00100at 28.776 kb on + strand, within CA264_00100at 28.776 kb on + strand, within CA264_00100at 28.777 kb on - strand, within CA264_00100at 28.777 kb on - strand, within CA264_00100at 28.836 kb on + strand, within CA264_00100at 28.837 kb on - strand, within CA264_00100at 28.942 kb on + strand, within CA264_00100at 28.976 kb on + strand, within CA264_00100at 29.202 kb on + strand, within CA264_00100at 29.203 kb on - strand, within CA264_00100at 29.249 kb on + strand, within CA264_00100at 29.272 kb on + strandat 29.273 kb on - strandat 29.512 kb on + strandat 29.627 kb on - strandat 29.665 kb on + strandat 29.678 kb on + strandat 29.759 kb on + strandat 29.759 kb on + strandat 29.760 kb on - strandat 29.760 kb on - strandat 29.786 kb on + strandat 29.790 kb on + strandat 29.890 kb on + strandat 29.903 kb on - strandat 29.928 kb on - strandat 29.930 kb on + strandat 29.930 kb on + strandat 29.931 kb on - strandat 29.931 kb on - strandat 29.977 kb on + strandat 30.051 kb on + strandat 30.052 kb on - strandat 30.052 kb on - strandat 30.059 kb on + strandat 30.060 kb on - strandat 30.061 kb on + strandat 30.062 kb on - strandat 30.109 kb on + strandat 30.152 kb on + strandat 30.152 kb on + strandat 30.153 kb on - strandat 30.247 kb on + strandat 30.247 kb on + strandat 30.247 kb on + strandat 30.247 kb on + strandat 30.249 kb on + strandat 30.252 kb on + strandat 30.269 kb on + strandat 30.289 kb on + strandat 30.332 kb on + strandat 30.413 kb on + strandat 30.444 kb on + strandat 30.444 kb on + strandat 30.445 kb on - strandat 30.445 kb on - strandat 30.445 kb on - strandat 30.511 kb on + strand, within CA264_00105at 30.511 kb on + strand, within CA264_00105at 30.511 kb on + strand, within CA264_00105at 30.512 kb on - strand, within CA264_00105at 30.514 kb on - strand, within CA264_00105at 30.554 kb on + strand, within CA264_00105at 30.603 kb on + strand, within CA264_00105at 30.632 kb on + strand, within CA264_00105

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM
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24,840 + CA264_00090 0.80 +0.1
24,918 - CA264_00090 0.83 +0.4
25,005 + CA264_00090 0.86 -1.7
25,005 + CA264_00090 0.86 -0.4
25,005 + CA264_00090 0.86 +0.5
25,006 - CA264_00090 0.86 -0.4
25,006 - CA264_00090 0.86 -0.9
25,031 + CA264_00090 0.87 -0.3
25,031 + CA264_00090 0.87 -0.0
25,051 - CA264_00090 0.88 -0.6
25,098 - CA264_00090 0.90 -0.2
25,111 + +1.5
25,272 - +1.1
25,272 - -1.4
25,346 + -0.2
25,374 - -0.5
25,382 - -0.4
25,382 - -0.7
25,393 - +1.1
25,393 - +0.6
25,399 - -0.4
25,399 - -0.7
25,443 + CA264_00095 0.13 -0.4
25,444 - CA264_00095 0.13 -0.8
25,446 + CA264_00095 0.14 -1.4
25,447 - CA264_00095 0.14 -1.1
25,569 + CA264_00095 0.46 +0.1
25,569 + CA264_00095 0.46 -1.2
25,598 + CA264_00095 0.53 -0.8
25,599 - CA264_00095 0.54 -1.4
25,712 - CA264_00095 0.83 +0.1
25,800 - -0.3
25,831 - +0.7
25,853 + -1.4
25,853 + +0.1
25,853 + +0.6
25,854 - -1.5
25,950 + +0.8
25,951 - +1.0
25,959 + +0.6
26,077 - +0.4
26,082 + -0.3
26,167 - -0.7
26,178 - +0.6
26,228 - CA264_00100 0.11 -0.3
26,460 + CA264_00100 0.17 -1.2
26,464 + CA264_00100 0.17 -1.3
26,465 - CA264_00100 0.17 -0.3
26,465 - CA264_00100 0.17 +0.3
26,465 - CA264_00100 0.17 -0.4
26,527 - CA264_00100 0.19 -0.6
26,527 - CA264_00100 0.19 -0.6
26,530 + CA264_00100 0.19 -1.0
26,530 + CA264_00100 0.19 -0.9
26,531 - CA264_00100 0.19 +0.0
26,531 - CA264_00100 0.19 -0.9
26,531 - CA264_00100 0.19 -1.2
26,531 - CA264_00100 0.19 -1.7
26,535 + CA264_00100 0.19 +1.0
26,536 - CA264_00100 0.19 -0.4
26,608 - CA264_00100 0.21 -0.3
26,608 - CA264_00100 0.21 +0.1
26,608 - CA264_00100 0.21 -0.0
26,632 + CA264_00100 0.22 -0.5
26,692 - CA264_00100 0.23 -0.4
26,692 - CA264_00100 0.23 +1.1
26,804 - CA264_00100 0.26 -0.7
26,940 + CA264_00100 0.30 -0.0
26,940 + CA264_00100 0.30 +0.1
26,941 - CA264_00100 0.30 -0.1
26,941 - CA264_00100 0.30 -0.4
26,944 - CA264_00100 0.30 -1.2
26,944 - CA264_00100 0.30 -0.2
27,243 + CA264_00100 0.37 +0.1
27,265 - CA264_00100 0.38 +0.2
27,288 + CA264_00100 0.39 +0.4
27,288 + CA264_00100 0.39 -0.8
27,288 + CA264_00100 0.39 -1.0
27,289 - CA264_00100 0.39 -0.2
27,289 - CA264_00100 0.39 -0.1
27,289 - CA264_00100 0.39 -1.1
27,289 - CA264_00100 0.39 +0.7
27,453 - CA264_00100 0.43 +0.2
27,453 - CA264_00100 0.43 +0.0
27,534 + CA264_00100 0.45 -0.4
27,737 + CA264_00100 0.50 -0.5
27,748 + CA264_00100 0.50 +1.1
27,768 + CA264_00100 0.51 +0.4
27,776 - CA264_00100 0.51 +0.1
27,776 - CA264_00100 0.51 +1.3
27,776 - CA264_00100 0.51 +0.1
27,776 - CA264_00100 0.51 +0.4
27,776 - CA264_00100 0.51 +0.3
27,783 + CA264_00100 0.51 -1.5
27,804 + CA264_00100 0.52 +1.1
27,861 - CA264_00100 0.53 +0.0
28,042 + CA264_00100 0.58 -2.3
28,047 + CA264_00100 0.58 +0.3
28,047 + CA264_00100 0.58 -0.6
28,127 + CA264_00100 0.60 +0.6
28,127 + CA264_00100 0.60 -1.3
28,128 - CA264_00100 0.60 -0.4
28,132 - CA264_00100 0.60 -0.4
28,346 + CA264_00100 0.66 -1.2
28,346 + CA264_00100 0.66 +0.1
28,346 + CA264_00100 0.66 +2.7
28,347 - CA264_00100 0.66 +0.1
28,347 - CA264_00100 0.66 +0.4
28,369 + CA264_00100 0.67 +0.5
28,370 - CA264_00100 0.67 -0.3
28,494 - CA264_00100 0.70 +1.0
28,494 - CA264_00100 0.70 -0.6
28,500 + CA264_00100 0.70 +0.1
28,515 - CA264_00100 0.70 +0.1
28,612 + CA264_00100 0.73 -0.2
28,612 + CA264_00100 0.73 -0.5
28,612 + CA264_00100 0.73 -0.7
28,612 + CA264_00100 0.73 -1.3
28,612 + CA264_00100 0.73 -0.5
28,613 - CA264_00100 0.73 -0.1
28,614 + CA264_00100 0.73 -0.4
28,614 + CA264_00100 0.73 -0.9
28,615 - CA264_00100 0.73 +0.7
28,665 + CA264_00100 0.74 +0.1
28,754 + CA264_00100 0.77 +0.1
28,754 + CA264_00100 0.77 +0.1
28,776 + CA264_00100 0.77 +0.1
28,776 + CA264_00100 0.77 -0.3
28,777 - CA264_00100 0.77 +1.0
28,777 - CA264_00100 0.77 -1.4
28,836 + CA264_00100 0.79 -0.2
28,837 - CA264_00100 0.79 +0.3
28,942 + CA264_00100 0.81 -0.5
28,976 + CA264_00100 0.82 +0.6
29,202 + CA264_00100 0.88 -0.4
29,203 - CA264_00100 0.88 -0.7
29,249 + CA264_00100 0.89 -1.0
29,272 + -0.2
29,273 - -0.0
29,512 + +0.1
29,627 - -0.1
29,665 + -0.4
29,678 + +1.1
29,759 + -0.8
29,759 + -0.8
29,760 - +1.9
29,760 - -1.3
29,786 + -1.1
29,790 + +2.1
29,890 + -2.3
29,903 - -0.6
29,928 - -1.3
29,930 + -0.1
29,930 + +1.0
29,931 - +1.1
29,931 - +0.0
29,977 + -0.0
30,051 + +0.4
30,052 - -0.2
30,052 - -0.2
30,059 + -0.3
30,060 - +1.1
30,061 + -0.4
30,062 - +0.8
30,109 + -0.1
30,152 + -0.6
30,152 + +0.3
30,153 - -0.7
30,247 + +0.1
30,247 + +0.0
30,247 + -0.3
30,247 + -0.6
30,249 + -0.1
30,252 + +0.1
30,269 + -0.3
30,289 + -0.2
30,332 + -0.0
30,413 + -1.1
30,444 + -0.1
30,444 + +0.5
30,445 - +0.3
30,445 - +1.0
30,445 - -0.7
30,511 + CA264_00105 0.12 +0.1
30,511 + CA264_00105 0.12 +0.1
30,511 + CA264_00105 0.12 -0.9
30,512 - CA264_00105 0.13 +0.4
30,514 - CA264_00105 0.13 -0.7
30,554 + CA264_00105 0.15 +1.1
30,603 + CA264_00105 0.17 -1.0
30,632 + CA264_00105 0.19 +0.1

Or see this region's nucleotide sequence