Strain Fitness in Escherichia coli BW25113 around b1856
Experiment: diethyl ether 5 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | diethyl ether 5 vol% |
---|---|---|---|---|---|
remove | |||||
1,937,580 | - | lpxM | b1855 | 0.34 | +0.4 |
1,937,674 | + | lpxM | b1855 | 0.44 | +0.0 |
1,937,696 | + | lpxM | b1855 | 0.46 | +0.0 |
1,937,696 | + | lpxM | b1855 | 0.46 | -1.3 |
1,937,738 | - | lpxM | b1855 | 0.51 | +1.0 |
1,937,742 | + | lpxM | b1855 | 0.51 | +0.4 |
1,937,844 | + | lpxM | b1855 | 0.62 | +0.4 |
1,937,989 | + | lpxM | b1855 | 0.76 | -0.3 |
1,937,997 | + | lpxM | b1855 | 0.77 | -0.5 |
1,938,027 | - | lpxM | b1855 | 0.80 | -0.2 |
1,938,132 | - | +0.3 | |||
1,938,137 | - | -2.0 | |||
1,938,167 | + | -0.1 | |||
1,938,546 | + | yebA | b1856 | 0.16 | +0.1 |
1,938,626 | - | yebA | b1856 | 0.22 | +0.3 |
1,938,668 | + | yebA | b1856 | 0.25 | +0.3 |
1,938,726 | - | yebA | b1856 | 0.29 | -0.1 |
1,938,822 | + | yebA | b1856 | 0.37 | -0.0 |
1,938,822 | + | yebA | b1856 | 0.37 | +0.6 |
1,939,004 | - | yebA | b1856 | 0.50 | +0.1 |
1,939,128 | - | yebA | b1856 | 0.60 | +0.5 |
1,939,179 | - | yebA | b1856 | 0.64 | +0.8 |
1,939,204 | - | yebA | b1856 | 0.66 | +0.8 |
1,939,241 | - | yebA | b1856 | 0.68 | +0.2 |
1,939,243 | - | yebA | b1856 | 0.68 | -0.4 |
1,939,287 | + | yebA | b1856 | 0.72 | +0.5 |
1,939,301 | + | yebA | b1856 | 0.73 | +0.7 |
1,939,301 | + | yebA | b1856 | 0.73 | -0.8 |
1,939,423 | + | yebA | b1856 | 0.82 | +0.1 |
1,939,440 | - | yebA | b1856 | 0.83 | +1.0 |
1,939,476 | - | yebA | b1856 | 0.86 | +0.1 |
1,939,652 | - | +0.4 | |||
1,939,694 | + | +1.1 | |||
1,939,813 | + | yebL | b1857 | 0.15 | -0.6 |
1,939,826 | + | yebL | b1857 | 0.16 | +0.3 |
1,939,826 | + | yebL | b1857 | 0.16 | +0.1 |
1,939,834 | - | yebL | b1857 | 0.17 | -0.4 |
1,939,834 | - | yebL | b1857 | 0.17 | +1.1 |
1,939,834 | - | yebL | b1857 | 0.17 | +0.7 |
1,940,017 | - | yebL | b1857 | 0.37 | -0.2 |
1,940,017 | - | yebL | b1857 | 0.37 | +0.4 |
1,940,087 | - | yebL | b1857 | 0.44 | -1.3 |
1,940,087 | - | yebL | b1857 | 0.44 | -0.7 |
1,940,238 | - | yebL | b1857 | 0.60 | +0.2 |
1,940,238 | - | yebL | b1857 | 0.60 | +0.2 |
1,940,554 | + | +0.2 |
Or see this region's nucleotide sequence