Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF913

Experiment: LB_plus_SM_buffer with Br60_phage 0.0005 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF912 and GFF913 overlap by 17 nucleotidesGFF913 and GFF914 overlap by 4 nucleotidesGFF914 and GFF915 are separated by 16 nucleotides GFF912 - Metallo-dependent hydrolases, subgroup B, at 89,820 to 90,953 GFF912 GFF913 - D-Glucosaminate-6-phosphate ammonia-lyase (EC 4.3.1.-), at 90,937 to 92,055 GFF913 GFF914 - 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) in D-glucosaminate utilization operon, at 92,052 to 92,792 GFF914 GFF915 - Putative BglB-family transcriptional antiterminator, at 92,809 to 94,722 GFF915 Position (kb) 90 91 92 93Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 90.096 kb on - strand, within GFF912at 90.142 kb on - strand, within GFF912at 90.173 kb on + strand, within GFF912at 90.174 kb on - strand, within GFF912at 90.254 kb on + strand, within GFF912at 90.367 kb on + strand, within GFF912at 90.367 kb on + strand, within GFF912at 90.368 kb on - strand, within GFF912at 90.368 kb on - strand, within GFF912at 90.371 kb on + strand, within GFF912at 90.371 kb on + strand, within GFF912at 90.372 kb on - strand, within GFF912at 90.372 kb on - strand, within GFF912at 90.372 kb on - strand, within GFF912at 90.585 kb on - strand, within GFF912at 90.605 kb on + strand, within GFF912at 90.605 kb on + strand, within GFF912at 90.606 kb on - strand, within GFF912at 90.625 kb on - strand, within GFF912at 90.625 kb on - strand, within GFF912at 90.665 kb on + strand, within GFF912at 90.806 kb on + strand, within GFF912at 90.807 kb on - strand, within GFF912at 90.813 kb on - strand, within GFF912at 90.856 kb on + strandat 90.856 kb on + strandat 90.857 kb on - strandat 90.909 kb on + strandat 91.103 kb on - strand, within GFF913at 91.227 kb on + strand, within GFF913at 91.228 kb on - strand, within GFF913at 91.381 kb on - strand, within GFF913at 91.405 kb on + strand, within GFF913at 91.405 kb on + strand, within GFF913at 91.405 kb on + strand, within GFF913at 91.408 kb on - strand, within GFF913at 91.427 kb on + strand, within GFF913at 91.480 kb on - strand, within GFF913at 91.554 kb on + strand, within GFF913at 91.558 kb on + strand, within GFF913at 91.632 kb on - strand, within GFF913at 91.752 kb on - strand, within GFF913at 91.811 kb on + strand, within GFF913at 91.921 kb on + strand, within GFF913at 91.930 kb on + strand, within GFF913at 91.931 kb on - strand, within GFF913at 92.001 kb on - strandat 92.220 kb on + strand, within GFF914at 92.232 kb on - strand, within GFF914at 92.311 kb on + strand, within GFF914at 92.482 kb on + strand, within GFF914at 92.568 kb on + strand, within GFF914at 92.569 kb on - strand, within GFF914at 92.570 kb on + strand, within GFF914at 92.571 kb on - strand, within GFF914at 92.578 kb on + strand, within GFF914at 92.681 kb on - strand, within GFF914at 92.703 kb on + strand, within GFF914at 92.706 kb on - strand, within GFF914at 92.706 kb on - strand, within GFF914at 92.720 kb on + strandat 92.720 kb on + strandat 92.761 kb on + strandat 92.761 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Br60_phage 0.0005 MOI
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90,096 - GFF912 0.24 +0.4
90,142 - GFF912 0.28 -0.3
90,173 + GFF912 0.31 +0.2
90,174 - GFF912 0.31 +2.7
90,254 + GFF912 0.38 -0.2
90,367 + GFF912 0.48 -0.4
90,367 + GFF912 0.48 +0.3
90,368 - GFF912 0.48 -0.2
90,368 - GFF912 0.48 -2.3
90,371 + GFF912 0.49 +0.3
90,371 + GFF912 0.49 +1.0
90,372 - GFF912 0.49 +0.0
90,372 - GFF912 0.49 +1.3
90,372 - GFF912 0.49 -0.4
90,585 - GFF912 0.67 +0.2
90,605 + GFF912 0.69 -0.3
90,605 + GFF912 0.69 -0.5
90,606 - GFF912 0.69 -0.8
90,625 - GFF912 0.71 -0.1
90,625 - GFF912 0.71 -0.2
90,665 + GFF912 0.75 -0.6
90,806 + GFF912 0.87 +4.1
90,807 - GFF912 0.87 +1.0
90,813 - GFF912 0.88 -0.8
90,856 + +0.4
90,856 + -1.0
90,857 - -0.7
90,909 + -1.6
91,103 - GFF913 0.15 +0.1
91,227 + GFF913 0.26 -0.3
91,228 - GFF913 0.26 -1.5
91,381 - GFF913 0.40 -0.3
91,405 + GFF913 0.42 -0.5
91,405 + GFF913 0.42 -0.1
91,405 + GFF913 0.42 -0.9
91,408 - GFF913 0.42 +0.9
91,427 + GFF913 0.44 +0.3
91,480 - GFF913 0.49 +1.1
91,554 + GFF913 0.55 +1.2
91,558 + GFF913 0.55 -0.2
91,632 - GFF913 0.62 +0.2
91,752 - GFF913 0.73 +0.3
91,811 + GFF913 0.78 +0.1
91,921 + GFF913 0.88 +0.4
91,930 + GFF913 0.89 +0.5
91,931 - GFF913 0.89 +5.3
92,001 - +1.6
92,220 + GFF914 0.23 +0.3
92,232 - GFF914 0.24 -0.5
92,311 + GFF914 0.35 +0.4
92,482 + GFF914 0.58 -0.1
92,568 + GFF914 0.70 +0.6
92,569 - GFF914 0.70 +0.3
92,570 + GFF914 0.70 +0.6
92,571 - GFF914 0.70 +0.5
92,578 + GFF914 0.71 +0.5
92,681 - GFF914 0.85 -1.5
92,703 + GFF914 0.88 +0.4
92,706 - GFF914 0.88 +0.6
92,706 - GFF914 0.88 +0.5
92,720 + +6.4
92,720 + -0.1
92,761 + +0.0
92,761 + +0.3

Or see this region's nucleotide sequence