Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4907

Experiment: LB_plus_SM_buffer with Br60_phage 0.0005 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4906 and GFF4907 overlap by 4 nucleotidesGFF4907 and GFF4908 are separated by 201 nucleotides GFF4906 - Virulence factor VirK, at 6,611 to 7,561 GFF4906 GFF4907 - Predicted ATP-dependent endonuclease of the OLD family, YbjD subgroup, at 7,558 to 9,216 GFF4907 GFF4908 - FIG003145: Surface protein, at 9,418 to 10,317 GFF4908 Position (kb) 7 8 9 10Strain fitness (log2 ratio) -1 0 1 2at 6.592 kb on + strandat 6.593 kb on - strandat 6.593 kb on - strandat 6.650 kb on + strandat 6.651 kb on - strandat 6.757 kb on - strand, within GFF4906at 6.813 kb on + strand, within GFF4906at 6.868 kb on + strand, within GFF4906at 6.876 kb on + strand, within GFF4906at 7.303 kb on + strand, within GFF4906at 7.303 kb on + strand, within GFF4906at 7.336 kb on + strand, within GFF4906at 7.337 kb on - strand, within GFF4906at 7.427 kb on + strand, within GFF4906at 7.427 kb on + strand, within GFF4906at 7.432 kb on + strand, within GFF4906at 7.480 kb on + strandat 7.788 kb on + strand, within GFF4907at 7.989 kb on + strand, within GFF4907at 8.037 kb on + strand, within GFF4907at 8.321 kb on - strand, within GFF4907at 8.367 kb on + strand, within GFF4907at 8.491 kb on - strand, within GFF4907at 8.561 kb on + strand, within GFF4907at 8.704 kb on - strand, within GFF4907at 8.715 kb on + strand, within GFF4907at 8.715 kb on + strand, within GFF4907at 8.937 kb on + strand, within GFF4907at 8.940 kb on - strand, within GFF4907at 8.988 kb on + strand, within GFF4907at 8.989 kb on - strand, within GFF4907at 9.017 kb on - strand, within GFF4907at 9.262 kb on - strandat 9.357 kb on - strandat 9.357 kb on - strandat 9.513 kb on - strand, within GFF4908at 9.535 kb on - strand, within GFF4908at 9.625 kb on - strand, within GFF4908at 9.635 kb on + strand, within GFF4908at 9.720 kb on + strand, within GFF4908at 9.720 kb on + strand, within GFF4908at 9.721 kb on - strand, within GFF4908at 9.831 kb on + strand, within GFF4908at 10.129 kb on - strand, within GFF4908

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Br60_phage 0.0005 MOI
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6,592 + -0.1
6,593 - +0.8
6,593 - +0.6
6,650 + -0.1
6,651 - +0.6
6,757 - GFF4906 0.15 +1.8
6,813 + GFF4906 0.21 +0.8
6,868 + GFF4906 0.27 +1.1
6,876 + GFF4906 0.28 +0.2
7,303 + GFF4906 0.73 +1.4
7,303 + GFF4906 0.73 +0.8
7,336 + GFF4906 0.76 -0.0
7,337 - GFF4906 0.76 +0.4
7,427 + GFF4906 0.86 +0.5
7,427 + GFF4906 0.86 +0.5
7,432 + GFF4906 0.86 +0.0
7,480 + -0.3
7,788 + GFF4907 0.14 +0.9
7,989 + GFF4907 0.26 +0.6
8,037 + GFF4907 0.29 -0.1
8,321 - GFF4907 0.46 -0.3
8,367 + GFF4907 0.49 +1.2
8,491 - GFF4907 0.56 -0.6
8,561 + GFF4907 0.60 -0.7
8,704 - GFF4907 0.69 -1.4
8,715 + GFF4907 0.70 +0.1
8,715 + GFF4907 0.70 -0.8
8,937 + GFF4907 0.83 +0.6
8,940 - GFF4907 0.83 -0.4
8,988 + GFF4907 0.86 +0.8
8,989 - GFF4907 0.86 -1.0
9,017 - GFF4907 0.88 +0.5
9,262 - +0.8
9,357 - -0.3
9,357 - -0.5
9,513 - GFF4908 0.11 +0.4
9,535 - GFF4908 0.13 +0.6
9,625 - GFF4908 0.23 +0.6
9,635 + GFF4908 0.24 -0.8
9,720 + GFF4908 0.34 +0.1
9,720 + GFF4908 0.34 -0.4
9,721 - GFF4908 0.34 +0.1
9,831 + GFF4908 0.46 -1.5
10,129 - GFF4908 0.79 -0.8

Or see this region's nucleotide sequence