Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4501

Experiment: LB_plus_SM_buffer with Br60_phage 0.0005 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4500 and GFF4501 are separated by 9 nucleotidesGFF4501 and GFF4502 are separated by 13 nucleotidesGFF4502 and GFF4503 overlap by 1 nucleotides GFF4500 - Isochorismate synthase (EC 5.4.4.2) of siderophore biosynthesis, at 286,469 to 287,644 GFF4500 GFF4501 - 2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58) [enterobactin] siderophore, at 287,654 to 289,264 GFF4501 GFF4502 - Isochorismatase (EC 3.3.2.1) of siderophore biosynthesis, at 289,278 to 290,135 GFF4502 GFF4503 - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28) of siderophore biosynthesis, at 290,135 to 290,890 GFF4503 Position (kb) 287 288 289 290Strain fitness (log2 ratio) -2 -1 0 1 2 3at 286.685 kb on - strand, within GFF4500at 286.929 kb on + strand, within GFF4500at 286.929 kb on + strand, within GFF4500at 286.933 kb on + strand, within GFF4500at 287.254 kb on - strand, within GFF4500at 287.642 kb on + strandat 287.661 kb on + strandat 287.661 kb on + strandat 287.715 kb on - strandat 287.847 kb on + strand, within GFF4501at 287.912 kb on + strand, within GFF4501at 287.912 kb on + strand, within GFF4501at 287.912 kb on + strand, within GFF4501at 287.913 kb on - strand, within GFF4501at 287.913 kb on - strand, within GFF4501at 287.913 kb on - strand, within GFF4501at 287.913 kb on - strand, within GFF4501at 287.946 kb on + strand, within GFF4501at 287.947 kb on - strand, within GFF4501at 287.990 kb on - strand, within GFF4501at 288.043 kb on + strand, within GFF4501at 288.043 kb on + strand, within GFF4501at 288.043 kb on + strand, within GFF4501at 288.044 kb on - strand, within GFF4501at 288.044 kb on - strand, within GFF4501at 288.229 kb on + strand, within GFF4501at 288.278 kb on + strand, within GFF4501at 288.356 kb on - strand, within GFF4501at 288.359 kb on + strand, within GFF4501at 288.360 kb on - strand, within GFF4501at 288.360 kb on - strand, within GFF4501at 288.514 kb on - strand, within GFF4501at 288.994 kb on - strand, within GFF4501at 289.083 kb on - strand, within GFF4501at 289.093 kb on - strand, within GFF4501at 289.093 kb on - strand, within GFF4501at 289.120 kb on - strandat 289.302 kb on + strandat 289.388 kb on + strand, within GFF4502at 289.389 kb on - strand, within GFF4502at 289.478 kb on + strand, within GFF4502at 289.479 kb on - strand, within GFF4502at 289.503 kb on + strand, within GFF4502at 289.556 kb on + strand, within GFF4502at 289.556 kb on + strand, within GFF4502at 289.556 kb on + strand, within GFF4502at 289.557 kb on - strand, within GFF4502at 289.604 kb on - strand, within GFF4502at 289.654 kb on - strand, within GFF4502at 289.739 kb on + strand, within GFF4502at 289.852 kb on - strand, within GFF4502at 289.852 kb on - strand, within GFF4502at 290.015 kb on - strand, within GFF4502at 290.051 kb on - strandat 290.133 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Br60_phage 0.0005 MOI
remove
286,685 - GFF4500 0.18 +1.0
286,929 + GFF4500 0.39 -1.5
286,929 + GFF4500 0.39 +1.2
286,933 + GFF4500 0.39 -0.4
287,254 - GFF4500 0.67 -0.6
287,642 + -0.1
287,661 + +1.4
287,661 + -1.0
287,715 - -0.2
287,847 + GFF4501 0.12 +0.2
287,912 + GFF4501 0.16 -1.2
287,912 + GFF4501 0.16 -0.8
287,912 + GFF4501 0.16 +0.4
287,913 - GFF4501 0.16 -0.4
287,913 - GFF4501 0.16 -0.7
287,913 - GFF4501 0.16 +1.3
287,913 - GFF4501 0.16 -0.1
287,946 + GFF4501 0.18 -0.9
287,947 - GFF4501 0.18 +0.6
287,990 - GFF4501 0.21 +0.9
288,043 + GFF4501 0.24 +1.0
288,043 + GFF4501 0.24 -0.0
288,043 + GFF4501 0.24 +1.4
288,044 - GFF4501 0.24 +2.0
288,044 - GFF4501 0.24 +0.3
288,229 + GFF4501 0.36 -1.3
288,278 + GFF4501 0.39 +0.5
288,356 - GFF4501 0.44 +0.0
288,359 + GFF4501 0.44 +0.1
288,360 - GFF4501 0.44 -1.7
288,360 - GFF4501 0.44 +0.2
288,514 - GFF4501 0.53 +1.0
288,994 - GFF4501 0.83 +0.5
289,083 - GFF4501 0.89 +0.7
289,093 - GFF4501 0.89 +0.9
289,093 - GFF4501 0.89 +0.9
289,120 - -0.1
289,302 + +0.3
289,388 + GFF4502 0.13 +0.6
289,389 - GFF4502 0.13 +0.8
289,478 + GFF4502 0.23 +0.5
289,479 - GFF4502 0.23 +0.4
289,503 + GFF4502 0.26 +0.3
289,556 + GFF4502 0.32 -0.4
289,556 + GFF4502 0.32 -0.5
289,556 + GFF4502 0.32 -0.3
289,557 - GFF4502 0.33 +1.1
289,604 - GFF4502 0.38 +1.3
289,654 - GFF4502 0.44 +1.1
289,739 + GFF4502 0.54 +0.8
289,852 - GFF4502 0.67 +0.2
289,852 - GFF4502 0.67 +3.0
290,015 - GFF4502 0.86 -0.5
290,051 - -2.1
290,133 + -2.4

Or see this region's nucleotide sequence