Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3899

Experiment: LB_plus_SM_buffer with Br60_phage 0.0005 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3898 and GFF3899 are separated by 0 nucleotidesGFF3899 and GFF3900 are separated by 108 nucleotides GFF3898 - O-antigen flippase Wzx, at 177,554 to 178,615 GFF3898 GFF3899 - O antigen biosynthesis rhamnosyltransferase rfbN (EC 2.4.1.-), at 178,616 to 179,560 GFF3899 GFF3900 - Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22) / Mannose-6-phosphate isomerase (EC 5.3.1.8), at 179,669 to 181,000 GFF3900 Position (kb) 178 179 180Strain fitness (log2 ratio) -1 0 1 2at 177.665 kb on - strand, within GFF3898at 179.418 kb on + strand, within GFF3899at 179.821 kb on + strand, within GFF3900

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Br60_phage 0.0005 MOI
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177,665 - GFF3898 0.10 +0.1
179,418 + GFF3899 0.85 -0.4
179,821 + GFF3900 0.11 +2.5

Or see this region's nucleotide sequence