Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF37

Experiment: LB_plus_SM_buffer with Br60_phage 0.0005 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF36 and GFF37 are separated by 180 nucleotidesGFF37 and GFF38 are separated by 12 nucleotides GFF36 - Chitinase (EC 3.2.1.14), at 13,143 to 14,906 GFF36 GFF37 - Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2), at 15,087 to 16,046 GFF37 GFF38 - DNA polymerase III alpha subunit (EC 2.7.7.7), at 16,059 to 19,493 GFF38 Position (kb) 15 16 17Strain fitness (log2 ratio) -2 -1 0 1 2at 14.097 kb on + strand, within GFF36at 14.098 kb on - strand, within GFF36at 14.102 kb on + strand, within GFF36at 14.236 kb on + strand, within GFF36at 14.242 kb on + strand, within GFF36at 14.243 kb on - strand, within GFF36at 14.246 kb on + strand, within GFF36at 14.334 kb on + strand, within GFF36at 14.335 kb on - strand, within GFF36at 14.481 kb on - strand, within GFF36at 14.481 kb on - strand, within GFF36at 14.483 kb on + strand, within GFF36at 14.495 kb on + strand, within GFF36at 14.586 kb on - strand, within GFF36at 14.814 kb on - strandat 14.925 kb on + strandat 14.964 kb on + strandat 14.965 kb on - strandat 15.100 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Br60_phage 0.0005 MOI
remove
14,097 + GFF36 0.54 +0.1
14,098 - GFF36 0.54 +0.7
14,102 + GFF36 0.54 +0.5
14,236 + GFF36 0.62 -1.9
14,242 + GFF36 0.62 +1.1
14,243 - GFF36 0.62 +0.2
14,246 + GFF36 0.63 +0.5
14,334 + GFF36 0.68 +1.8
14,335 - GFF36 0.68 +0.7
14,481 - GFF36 0.76 -0.2
14,481 - GFF36 0.76 +1.8
14,483 + GFF36 0.76 +0.7
14,495 + GFF36 0.77 +1.5
14,586 - GFF36 0.82 -1.1
14,814 - +0.2
14,925 + -0.2
14,964 + +0.1
14,965 - +0.2
15,100 + +1.5

Or see this region's nucleotide sequence